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BaseInfo

ncRNA ID	novel_zma_miR4281
Species	Zea mays
Class	miRNA
Genome position	Chr3:29423939-29423995 [-]
Reference genome	RefGen_v4
Source	SRR2287160;SRR2287161;SRR2287164;SRR2287165
Length	24
Mature sequence(if miRNA)	1 - UUGGAGGGGAUUGAUACGGAUUAA - 24
Stem-loop(if miRNA)	AAGGC    -      A          A      UUGU UCGGUU UUUUCAAUCC U      |||| |||||| ||||||||||      GGCA AGUUAG GGAGGUUAGG A AAUUA    U      G          U
Stem-loop sequence	AAGGCUUGUUCGGUUAUUUUCAAUCCAUAUGGAUUGGAGGGGAUUGAUACGGAUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU956568.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   *||||||||||||||||||||||| targets:1620   CUAAUCCGUAUCAAUCCCCUCCAA   1643 Target Full Sequence	0.0	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:24   AA-UUAGGCAUAGUUAGGGGAGGUU   1   ||-|||||||||||||||||||||| targets:688   UUCAAUCCGUAUCAAUCCCCUCCAA   712 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
XM_020545207.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **|||||||||||||||||||||| targets:12   CCAAUCCGUAUCAAUCCCCUCCAA   35 Target Full Sequence	0.0	PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **|||||||||||||||||||||| targets:1970   CCAAUCCGUAUCAAUCCCCUCCAA   1993 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **|||||||||||||||||||||| targets:1970   CCAAUCCGUAUCAAUCCCCUCCAA   1993 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_008658561.2	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **|||||||||||||||||||||| targets:291   CCAAUCCGUAUCAAUCCCCUCCAA   314 Target Full Sequence	0.0	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   AA--UUAGGCAUAGUUAGGGGAGGUU   1   ||--|||||||||=|||||||||||| targets:1148   UUCCAAUCCGUAUUAAUCCCCUCCAA   1173 Target Full Sequence	1.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **||||||||||||||||||||=| targets:1037   CCAAUCCGUAUCAAUCCCCUCCGA   1060 Target Full Sequence	1.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   AA--UUAGGCAUAGUUAGGGGAGGUU   1   ||--|||||||||=|||||||||||| targets:1186   UUCCAAUCCGUAUUAAUCCCCUCCAA   1211 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **||||||||||||||||||||=| targets:1075   CCAAUCCGUAUCAAUCCCCUCCGA   1098 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   AA--UUAGGCAUAGUUAGGGGAGGUU   1   ||--||||||||||||||||||=||| targets:964   UUCCAAUCCGUAUCAAUCCCCUUCAA   989 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **|||||||||||||||||||=|| targets:774   CCAAUCCGUAUCAAUCCCCUCUAA   797 Target Full Sequence	1.5	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT064935.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **||||||||||||||||=||||| targets:826   CCAAUCCGUAUCAAUCCCUUCCAA   849 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds	NA	coding protein	psRNATarget
EU953075.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **||||||||||||||=||||||| targets:998   CCAAUCCGUAUCAAUCUCCUCCAA   1021 Target Full Sequence	1.5	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **||||||||||||||||||=||| targets:1411   CCAAUCCGUAUCAAUCCCCUUCAA   1434 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **||||||||||||||||||=||| targets:1455   CCAAUCCGUAUCAAUCCCCUUCAA   1478 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **||||||||||||||||||=||| targets:1473   CCAAUCCGUAUCAAUCCCCUUCAA   1496 Target Full Sequence	1.5	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **||||||||||||||||||=||| targets:1487   CCAAUCCGUAUCAAUCCCCUUCAA   1510 Target Full Sequence	1.5	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **||||||||||||||||||=||| targets:1487   CCAAUCCGUAUCAAUCCCCUUCAA   1510 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   |*|||||*|||||||||||||||| targets:435   UCAAUCCAUAUCAAUCCCCUCCAA   458 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
NM_001156482.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   |*||||||||||||||*||||||| targets:878   UCAAUCCGUAUCAAUCACCUCCAA   901 Target Full Sequence	1.5	Zea mays threonine endopeptidase (LOC100283581), mRNA	NA	coding protein	psRNATarget
EU965203.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   |*||||||||||||||*||||||| targets:878   UCAAUCCGUAUCAAUCACCUCCAA   901 Target Full Sequence	1.5	Zea mays clone 284456 threonine endopeptidase mRNA, complete cds	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **|||||*|||||||||||||||| targets:888   CCAAUCCAUAUCAAUCCCCUCCAA   911 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **|||||*|||||||||||||||| targets:836   CCAAUCCAUAUCAAUCCCCUCCAA   859 Target Full Sequence	1.0	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **|||||*|||||||||||||||| targets:834   CCAAUCCAUAUCAAUCCCCUCCAA   857 Target Full Sequence	1.0	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **|||||*|||||||||||||||| targets:835   CCAAUCCAUAUCAAUCCCCUCCAA   858 Target Full Sequence	1.0	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **|||||*|||||||||||||||| targets:907   CCAAUCCAUAUCAAUCCCCUCCAA   930 Target Full Sequence	1.0	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   AAUUAGGCAUAGUUAGGGGAGGUU   1   **|**||*|||||||||||||||| targets:834   CCAMYCCAUAUCAAUCCCCUCCAA   857 Target Full Sequence	1.0	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget