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BaseInfo

ncRNA ID novel_zma_miR4264
Species Zea mays
Class miRNA
Genome position Chr3:212024962-212025109 [+]
Reference genome RefGen_v4
Source SRR2287160;SRR2089705
Length 24
Mature sequence(if miRNA) 1 - GCGGUGUUCUCUGGUCAGGCGCGG - 24
Stem-loop(if miRNA) --G   U    U   -      -       G    GC     A G   --A   G       A      GC   -   G
   CGG GUUC CUG GUCAGG CGCGGAC GUCC  GGCCC G GCC   GAC GUCCGCG CCUGGC  GAG GCG C
   ||| |||| ||| |||||| ||||||| ||||  ||||| | |||   ||| ||||||| ||||||  ||| |||
   GCU CGAG GAC UGGUCC GCGCCUG CAGG  CCGGG C CGG   CUG CAGGCGC GGACUG  CUC CGU G
UGG   -    -   G      A       G    --     A G   CGC   G       -      GU   U   G
Stem-loop sequence GCGGUGUUCUCUGGUCAGGCGCGGACGGUCCGCGGCCCAGGGCCAGACGGUCCGCGACCUGGCGCGAGGCGGCGGUGCUCUCUGGUCAGGCGCGGACGGUCCGCGGCGCAGGGCCGGACGGUCCGCGACCUGGUGCAGGAGCUCGGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ096610.1
ncRNA:24   GGCGCGGACUGGUCUCUUGUGGCG   1
  |||||=|||||||||||=||||||
targets:31   CCGCGUCUGACCAGAGAGCACCGC   54

2.5 TSA: Zea mays contig32265, mRNA sequence NA coding protein psRNATarget