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BaseInfo

ncRNA ID	novel_zma_miR4254
Species	Zea mays
Class	miRNA
Genome position	Chr2:56118436-56118507 [+]
Reference genome	RefGen_v4
Source	SRR2287160;SRR2287163
Length	24
Mature sequence(if miRNA)	1 - GAGCCCUAGGGUCGGACGGAGCGG - 24
Stem-loop(if miRNA)	--  G        -      -G    G      G UGU   GA CCCUAGGG UCGGAC  GAGC GAGUUC C   C   || |||||||| ||||||  |||| |||||| |   CU GGGGUCCC AGCCUG  CUCG UUCAGG G   U GG  -        G      AG    A      - CCU
Stem-loop sequence	GAGCCCUAGGGUCGGACGGAGCGGAGUUCGCUGUCUUCCGGGACUUAGCUCGAGUCCGAGCCCUGGGGUCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU951983.1	ncRNA:24   GGCGAGGCAGGCUGGGAUCCCGAG   1   ||||||||*|||||||*||||||| targets:475   CCGCUCCGCCCGACCCCAGGGCUC   498 Target Full Sequence	2.5	Zea mays clone 1064297 mRNA sequence	NA	coding protein	psRNATarget
EU951983.1	ncRNA:24   GGCGAGGCAGGCUGGGAUCCCGAG   1   ||||||||*|||||||*||||||| targets:646   CCGCUCCGCCCGACCCCAGGGCUC   669 Target Full Sequence	2.5	Zea mays clone 1064297 mRNA sequence	NA	coding protein	psRNATarget
EU951983.1	ncRNA:24   GGCGAGGCAGGCUGGGAUCCCGAG   1   ||||||||*|||||||*||||||| targets:703   CCGCUCCGCCCGACCCCAGGGCUC   726 Target Full Sequence	2.5	Zea mays clone 1064297 mRNA sequence	NA	coding protein	psRNATarget
EU951983.1	ncRNA:24   GGCGAGGCAGGCUGGGAUCCCGAG   1   ||||||||*|||||||*||||||| targets:760   CCGCUCCGCCCGACCCCAGGGCUC   783 Target Full Sequence	2.5	Zea mays clone 1064297 mRNA sequence	NA	coding protein	psRNATarget
EU951983.1	ncRNA:24   GGCGAGGCAGGCUGGGAUCCCGAG   1   ||||*|||*|||||||*||||||| targets:532   CCGCCCCGCCCGACCCCAGGGCUC   555 Target Full Sequence	2.5	Zea mays clone 1064297 mRNA sequence	NA	coding protein	psRNATarget
BT038063.1	ncRNA:24   GGCGAGGCAGGCUGGGAUCCCGAG   1   ||||||||*|||||||*||||||| targets:781   CCGCUCCGCCCGACCCCAGGGCUC   804 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0209O09 mRNA, complete cds	NA	coding protein	psRNATarget
BT038063.1	ncRNA:24   GGCGAGGCAGGCUGGGAUCCCGAG   1   ||||||||*|||||||*||||||| targets:952   CCGCUCCGCCCGACCCCAGGGCUC   975 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0209O09 mRNA, complete cds	NA	coding protein	psRNATarget
BT038063.1	ncRNA:24   GGCGAGGCAGGCUGGGAUCCCGAG   1   ||||||||*|||||||*||||||| targets:1009   CCGCUCCGCCCGACCCCAGGGCUC   1032 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0209O09 mRNA, complete cds	NA	coding protein	psRNATarget
BT038063.1	ncRNA:24   GGCGAGGCAGGCUGGGAUCCCGAG   1   ||||||||*|||||||*||||||| targets:1066   CCGCUCCGCCCGACCCCAGGGCUC   1089 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0209O09 mRNA, complete cds	NA	coding protein	psRNATarget
BT038063.1	ncRNA:24   GGCGAGGCAGGCUGGGAUCCCGAG   1   ||||*|||*|||||||*||||||| targets:838   CCGCCCCGCCCGACCCCAGGGCUC   861 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0209O09 mRNA, complete cds	NA	coding protein	psRNATarget
EU941303.1	ncRNA:24   GGCGAGGCAGGCUGGGAUCCCGAG   1   ||||*=||*||||||||||||||| targets:51   CCGCCUCGCCCGACCCUAGGGCUC   74 Target Full Sequence	2.0	Zea mays clone 1444511 mRNA sequence	NA	coding protein	psRNATarget
XM_020541001.1	ncRNA:24   GGCGAGGCAGGCUGGGAUCCCGAG   1   ||||*=||*||||||||||||||| targets:5202   CCGCCUCGCCCGACCCUAGGGCUC   5225 Target Full Sequence	2.0	PREDICTED: Zea mays plasma membrane ATPase 2-like (LOC103632998), transcript variant X36, mRNA	NA	coding protein	psRNATarget
XM_008654039.1	ncRNA:24   GGCGAGGCAGGCUGGGAUCCCGAG   1   ||||*==|*||||||||||||||| targets:407   CCGCCUUGCCCGACCCUAGGGCUC   430 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103632220 (LOC103632220), mRNA	NA	coding protein	psRNATarget