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BaseInfo

ncRNA ID novel_zma_miR4253
Species Zea mays
Class miRNA
Genome position Chr2:23897281-23897467 [-]
Reference genome RefGen_v4
Source SRR2287160
Length 24
Mature sequence(if miRNA) 164 - AAAGUUUAGCCCGGUUCACAUCAA - 187
Stem-loop(if miRNA) --            -G    A    A  C      -     AAAUAG   U  -  -- AUA   AC   ACCAACUGGACUAGAUUCGUCUCGUCUUUUA
  AAAGUUUAGCCC  GUUC CAUC AG GUUUGA CUUUU      GAG AU GA  A   UAG  CCA                               A
  ||||||||||||  |||| |||| || |||||| |||||      ||| || ||  |   |||  |||
  UUUUAAAUCGGG  CAGG GUAG UU CAAACU GGAGG      AAG CC AU  U   UUA  AUC                               U
GA            GA    -    C  A      U     ----CA   -  C  AA ---   -C   AGCCUAAUAUUUUGAUUAAACAGUCGGCUUC
Stem-loop sequence AAAGUUUAGCCCGGUUCACAUCAAGCGUUUGACUUUUAAAUAGGAGUAUGAAAUAUAGACCCAACCAACUGGACUAGAUUCGUCUCGUCUUUUAAUCUUCGGCUGACAAAUUAGUUUUAUAAUCCGACUACAUUUAAUACCCGAAACGGAGGUUCAAACAUUCGAUGGGACAGGGGCUAAAUUUUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ056664.1
ncRNA:24   AACUACACUUGGCCCGAUUUGAAA   1
  |||||||||*||||||||||||||
targets:99   UUGAUGUGACCCGGGCUAAACUUU   122

1.0 TSA: Zea mays contig57786, mRNA sequence NA coding protein psRNATarget
LQ235518.1
ncRNA:24   AACUACACUUGGCCCGAUUUGAAA   1
  |||||||||*||||||||||||||
targets:162   UUGAUGUGACCCGGGCUAAACUUU   185

1.0 Sequence 1513 from Patent EP2985353 NA coding protein psRNATarget
HI403388.1
ncRNA:24   AACUACACUUGGCCCGAUUUGAAA   1
  |||||||||*||||||||||||||
targets:162   UUGAUGUGACCCGGGCUAAACUUU   185

1.0 Sequence 1513 from Patent EP2074227 NA coding protein psRNATarget
HI403332.1
ncRNA:24   AACUACACUUGGCCCGAUUUGAAA   1
  |||||||||*||||||||||||||
targets:162   UUGAUGUGACCCGGGCUAAACUUU   185

1.0 Sequence 1457 from Patent EP2074227 NA coding protein psRNATarget
JB163793.1
ncRNA:24   AACUACACUUGGCCCGAUUUGAAA   1
  |||||||||*||||||||||||||
targets:162   UUGAUGUGACCCGGGCUAAACUUU   185

1.0 Sequence 1457 from Patent EP2559767 NA coding protein psRNATarget
HI403390.1
ncRNA:24   AACUACACUUGGCCCGAUUUGAAA   1
  |||||||||*||||||||||||||
targets:162   UUGAUGUGACCCGGGCUAAACUUU   185

1.0 Sequence 1515 from Patent EP2074227 NA coding protein psRNATarget
JB163851.1
ncRNA:24   AACUACACUUGGCCCGAUUUGAAA   1
  |||||||||*||||||||||||||
targets:162   UUGAUGUGACCCGGGCUAAACUUU   185

1.0 Sequence 1515 from Patent EP2559767 NA coding protein psRNATarget
LQ235520.1
ncRNA:24   AACUACACUUGGCCCGAUUUGAAA   1
  |||||||||*||||||||||||||
targets:162   UUGAUGUGACCCGGGCUAAACUUU   185

1.0 Sequence 1515 from Patent EP2985353 NA coding protein psRNATarget
JB163849.1
ncRNA:24   AACUACACUUGGCCCGAUUUGAAA   1
  |||||||||*||||||||||||||
targets:162   UUGAUGUGACCCGGGCUAAACUUU   185

1.0 Sequence 1513 from Patent EP2559767 NA coding protein psRNATarget
LQ235462.1
ncRNA:24   AACUACACUUGGCCCGAUUUGAAA   1
  |||||||||*||||||||||||||
targets:162   UUGAUGUGACCCGGGCUAAACUUU   185

1.0 Sequence 1457 from Patent EP2985353 NA coding protein psRNATarget
EU949360.1
ncRNA:24   AACUACACUUGGCCCGAUUUGAAA   1
  |||||||||*||||||||||||||
targets:820   UUGAUGUGACCCGGGCUAAACUUU   843

1.0 Zea mays clone 403134 mRNA sequence NA coding protein psRNATarget
XM_008656975.2
ncRNA:24   AACUACACUUGGCCCGAUUUGAAA   1
  |||||||||*||||||||||||||
targets:814   UUGAUGUGACCCGGGCUAAACUUU   837

1.0 PREDICTED: Zea mays putative disease resistance RPP13-like protein 1 (LOC103634594), mRNA NA coding protein psRNATarget
BT054237.2
ncRNA:24   AACUACACUUGGCCCGAUUUGAAA   1
  |||||||||*||||*|||||||||
targets:993   UUGAUGUGACCCGGACUAAACUUU   1016

2.5 Zea mays full-length cDNA clone ZM_BFb0189C11 mRNA, complete cds NA coding protein psRNATarget
NM_001152444.1
ncRNA:24   AACUACACUUGGCCCGAUUUGAAA   1
  |||||||||*||||*|||||||||
targets:993   UUGAUGUGACCCGGACUAAACUUU   1016

2.5 Zea mays uncharacterized LOC100279435 (LOC100279435), mRNA NA coding protein psRNATarget
XM_020544947.1
ncRNA:24   AACUACACUUGGCCCGAUUUGAAA   1
  |||||||||*||||*|||||||||
targets:2899   UUGAUGUGACCCGGACUAAACUUU   2922

2.5 PREDICTED: Zea mays uncharacterized LOC100273701 (LOC100273701), transcript variant X1, mRNA NA coding protein psRNATarget