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BaseInfo

ncRNA ID	novel_zma_miR4251
Species	Zea mays
Class	miRNA
Genome position	Chr1:7980359-7980406 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	22
Mature sequence(if miRNA)	27 - AGGUUCUUUGCCGAGUGCAGUG - 48
Stem-loop(if miRNA)	--  G               -  U   AG UUCUUUGCCGAGUGC AG G   || ||||||||||||||| || G   UC AAGAAAUGGCUCACG UC C GC  G               A  U
Stem-loop sequence	AGGUUCUUUGCCGAGUGCAGUGGCUCUAGCACUCGGUAAAGAAGCUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI407027.1	ncRNA:22   GUGACGUGAGCCGUUUCUUGGA   1   ||=|*||||||||||||||||| targets:12   CAUUACACUCGGCAAAGAACCU   33 Target Full Sequence	1.0	Sequence 5152 from Patent EP2074227	NA	coding protein	psRNATarget
JB167488.1	ncRNA:22   GUGACGUGAGCCGUUUCUUGGA   1   ||=|*||||||||||||||||| targets:12   CAUUACACUCGGCAAAGAACCU   33 Target Full Sequence	1.0	Sequence 5152 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239157.1	ncRNA:22   GUGACGUGAGCCGUUUCUUGGA   1   ||=|*||||||||||||||||| targets:12   CAUUACACUCGGCAAAGAACCU   33 Target Full Sequence	1.0	Sequence 5152 from Patent EP2985353	NA	coding protein	psRNATarget
EZ067174.1	ncRNA:22   GUGAC-GUGAGCCGUUUCUUGGA   1   *||||-||||||||||||||||| targets:17   GACUGGCACUCGGCAAAGAACCU   39 Target Full Sequence	2.0	TSA: Zea mays contig02808, mRNA sequence	NA	coding protein	psRNATarget
LQ238769.1	ncRNA:22   GUGACGUGAGCCGUUUCUUGGA   1   ||=|*||||||||||||||||| targets:190   CAUUACACUCGGCAAAGAACCU   211 Target Full Sequence	1.0	Sequence 4764 from Patent EP2985353	NA	coding protein	psRNATarget
HI406639.1	ncRNA:22   GUGACGUGAGCCGUUUCUUGGA   1   ||=|*||||||||||||||||| targets:190   CAUUACACUCGGCAAAGAACCU   211 Target Full Sequence	1.0	Sequence 4764 from Patent EP2074227	NA	coding protein	psRNATarget
JB167100.1	ncRNA:22   GUGACGUGAGCCGUUUCUUGGA   1   ||=|*||||||||||||||||| targets:190   CAUUACACUCGGCAAAGAACCU   211 Target Full Sequence	1.0	Sequence 4764 from Patent EP2559767	NA	coding protein	psRNATarget
JB166605.1	ncRNA:22   GUGACGUGAGCCGUUUCUUGGA   1   ||=*|||||||||||||||||* targets:14   CAUAGCACUCGGCAAAGAACCA   35 Target Full Sequence	2.0	Sequence 4269 from Patent EP2559767	NA	coding protein	psRNATarget
HI406144.1	ncRNA:22   GUGACGUGAGCCGUUUCUUGGA   1   ||=*|||||||||||||||||* targets:14   CAUAGCACUCGGCAAAGAACCA   35 Target Full Sequence	2.0	Sequence 4269 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238274.1	ncRNA:22   GUGACGUGAGCCGUUUCUUGGA   1   ||=*|||||||||||||||||* targets:14   CAUAGCACUCGGCAAAGAACCA   35 Target Full Sequence	2.0	Sequence 4269 from Patent EP2985353	NA	coding protein	psRNATarget
BT042352.1	ncRNA:22   GUGACGUGAGCCGUUUCUUGGA   1   =*=||||||||||||||||*|| targets:1243   UUUUGCACUCGGCAAAGAAGCU   1264 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148473.2	ncRNA:22   GUGACGUGAGCCGUUUCUUGGA   1   =*=||||||||||||||||*|| targets:1293   UUUUGCACUCGGCAAAGAAGCU   1314 Target Full Sequence	1.5	Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA	NA	coding protein	psRNATarget
BT062891.2	ncRNA:22   GUGACGUG-AGCCGUUUCUUGGA   1   =**|||||-|||||||||||||* targets:956   UCGUGCACAUCGGCAAAGAACCA   978 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0004J15 mRNA, complete cds	NA	coding protein	psRNATarget
HI406693.1	ncRNA:22   GUGACGUGAGCCGUUUCUUGGA   1   =***|||||||||||||||*|| targets:8   UCGGGCACUCGGCAAAGAAGCU   29 Target Full Sequence	2.5	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
JB167154.1	ncRNA:22   GUGACGUGAGCCGUUUCUUGGA   1   =***|||||||||||||||*|| targets:8   UCGGGCACUCGGCAAAGAAGCU   29 Target Full Sequence	2.5	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:22   GUGACGUGAGCCGUUUCUUGGA   1   =***|||||||||||||||*|| targets:8   UCGGGCACUCGGCAAAGAAGCU   29 Target Full Sequence	2.5	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget