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BaseInfo

ncRNA ID novel_zma_miR4250
Species Zea mays
Class miRNA
Genome position Chr2:64344209-64344340 [-]
Reference genome RefGen_v4
Source SRR2287160
Length 22
Mature sequence(if miRNA) 111 - UUUGAAUGUGGAAAAAAUGUCA - 132
Stem-loop(if miRNA) --     A           U   A     C      C  G              A    GAG   U
  UUUGA UGUGGAAAAAA GUC UUUUG CCAUAA UG AAAGUCAAACCACC ACUU   UGC U
  ||||| ||||||||||| ||| ||||| |||||| || |||||||||||||| ||||   |||
  AAACU ACACCUUUUUU CAG AAAAC GGUGUU AC UUUCAGUUUGGUGG UGAG   ACG U
CG     C           C   C     A      A  G              A    GGA   G
Stem-loop sequence UUUGAAUGUGGAAAAAAUGUCAUUUUGCCCAUAACUGGAAAGUCAAACCACCAACUUGAGUGCUUUGGCAAGGGAGUAGGUGGUUUGACUUUGCAAUUGUGGACAAAACGACCUUUUUUCCACACUCAAAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ085058.1
ncRNA:22   ACUGUAAAAAAGGUGUAAGUUU   1
  **||||*||||=||||||||||
targets:35   AAACAUGUUUUUCACAUUCAAA   56

2.5 TSA: Zea mays contig20702, mRNA sequence NA coding protein psRNATarget