Search result

BaseInfo

ncRNA ID novel_zma_miR4246
Species Zea mays
Class miRNA
Genome position Chr10:23345713-23345890 [-]
Reference genome RefGen_v4
Source SRR2287160;SRR2089700
Length 24
Mature sequence(if miRNA) 155 - AAGCGUGCAAGCAAACAAUCUGAU - 178
Stem-loop(if miRNA) --                A         U       AC             AUACA    UGGUUUGUUAGGGUUUUUUUAUAAAGAUUAU
  AAGCGUGCAAGCAAAC AUCUGAUUC UUAGAUU  GAUCCAACCAUAG     ACCA                               U
  |||||||||||||||| ||||||||| |||||||  |||||||||||||     ||||                               A
  UUCGCACGUUCGUUUG UAGACUAGG AAUCUAG  CUAGGUUGGUAUC     CAGU                               A
CG                G         U       CA             -----    GUAAAUUGUGAAUGUGGGAAGGUGGUGGUCG
Stem-loop sequence AAGCGUGCAAGCAAACAAUCUGAUUCUUUAGAUUACGAUCCAACCAUAGAUACAACCAUGGUUUGUUAGGGUUUUUUUAUAAAGAUUAUUAAGCUGGUGGUGGAAGGGUGUAAGUGUUAAAUGUGACCUAUGGUUGGAUCACGAUCUAAUGGAUCAGAUGGUUUGCUUGCACGCUUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163856.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*||||||||||||||||
targets:176   AUCAGAUGGUUUGCUUGCACGCUU   199

1.0 Sequence 1520 from Patent EP2559767 NA coding protein psRNATarget
LQ235525.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*||||||||||||||||
targets:176   AUCAGAUGGUUUGCUUGCACGCUU   199

1.0 Sequence 1520 from Patent EP2985353 NA coding protein psRNATarget
HI403395.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*||||||||||||||||
targets:176   AUCAGAUGGUUUGCUUGCACGCUU   199

1.0 Sequence 1520 from Patent EP2074227 NA coding protein psRNATarget
LQ235586.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*||||||||||||||||
targets:177   AUCAGAUAGUUUGCUUGCACGCUU   200

1.0 Sequence 1581 from Patent EP2985353 NA coding protein psRNATarget
JB163917.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*||||||||||||||||
targets:177   AUCAGAUAGUUUGCUUGCACGCUU   200

1.0 Sequence 1581 from Patent EP2559767 NA coding protein psRNATarget
HI403456.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*||||||||||||||||
targets:177   AUCAGAUAGUUUGCUUGCACGCUU   200

1.0 Sequence 1581 from Patent EP2074227 NA coding protein psRNATarget
XM_008680394.2
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*||||||||||||||||
targets:270   AUCAGAUGGUUUGCUUGCACGCUU   293

1.0 PREDICTED: Zea mays mini zinc finger protein 4 (LOC103653502), mRNA NA coding protein psRNATarget
XM_020538741.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*||||||||||||||||
targets:977   AUCAGAUGGUUUGCUUGCACGCUU   1000

1.0 PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008648194.2
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*||||||||||||||||
targets:977   AUCAGAUGGUUUGCUUGCACGCUU   1000

1.0 PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X1, mRNA NA coding protein psRNATarget
LQ235556.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*|||||=||||||||||
targets:175   AUCAGAUGGUUUGUUUGCACGCUU   198

2.5 Sequence 1551 from Patent EP2985353 NA coding protein psRNATarget
JB163887.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*|||||=||||||||||
targets:175   AUCAGAUGGUUUGUUUGCACGCUU   198

2.5 Sequence 1551 from Patent EP2559767 NA coding protein psRNATarget
HI403426.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*|||||=||||||||||
targets:175   AUCAGAUGGUUUGUUUGCACGCUU   198

2.5 Sequence 1551 from Patent EP2074227 NA coding protein psRNATarget
XM_008664646.2
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*|||||=||||||||||
targets:379   AUCAGAUGGUUUGUUUGCACGCUU   402

2.5 PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008664645.2
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*|||||=||||||||||
targets:379   AUCAGAUGGUUUGUUUGCACGCUU   402

2.5 PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008664644.2
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*|||||=||||||||||
targets:379   AUCAGAUGGUUUGUUUGCACGCUU   402

2.5 PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008646929.2
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  ||=||||*|||||=||||||||||
targets:2437   AUUAGAUGGUUUGUUUGCACGCUU   2460

2.5 PREDICTED: Zea mays hypothetical protein (LOC103626515), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008646930.2
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  ||=||||*|||||=||||||||||
targets:2446   AUUAGAUGGUUUGUUUGCACGCUU   2469

2.5 PREDICTED: Zea mays hypothetical protein (LOC103626515), transcript variant X4, mRNA NA coding protein psRNATarget
EZ076467.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*||||||||*|||||||
targets:63   AUCAGAUGGUUUGCUUACACGCUU   86

2.5 TSA: Zea mays contig12104, mRNA sequence NA coding protein psRNATarget
LQ235277.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||**|||||||||||||||
targets:176   AUCAGAUGAUUUGCUUGCACGCUU   199

2.0 Sequence 1272 from Patent EP2985353 NA coding protein psRNATarget
LQ235317.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*||||||||||||*|||
targets:176   AUCAGAUGGUUUGCUUGCACUCUU   199

2.5 Sequence 1312 from Patent EP2985353 NA coding protein psRNATarget
JB163608.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||**|||||||||||||||
targets:176   AUCAGAUGAUUUGCUUGCACGCUU   199

2.0 Sequence 1272 from Patent EP2559767 NA coding protein psRNATarget
HI403147.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||**|||||||||||||||
targets:176   AUCAGAUGAUUUGCUUGCACGCUU   199

2.0 Sequence 1272 from Patent EP2074227 NA coding protein psRNATarget
LQ235069.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||**|||||||||||||||
targets:176   AUCAGAUGAUUUGCUUGCACGCUU   199

2.0 Sequence 1064 from Patent EP2985353 NA coding protein psRNATarget
HI403187.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*||||||||||||*|||
targets:176   AUCAGAUGGUUUGCUUGCACUCUU   199

2.5 Sequence 1312 from Patent EP2074227 NA coding protein psRNATarget
JB163648.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||*||||||||||||*|||
targets:176   AUCAGAUGGUUUGCUUGCACUCUU   199

2.5 Sequence 1312 from Patent EP2559767 NA coding protein psRNATarget
HI402939.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||**|||||||||||||||
targets:176   AUCAGAUGAUUUGCUUGCACGCUU   199

2.0 Sequence 1064 from Patent EP2074227 NA coding protein psRNATarget
JB163400.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||**|||||||||||||||
targets:176   AUCAGAUGAUUUGCUUGCACGCUU   199

2.0 Sequence 1064 from Patent EP2559767 NA coding protein psRNATarget
LQ235247.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||**|||||||||||||||
targets:177   AUCAGAUGAUUUGCUUGCACGCUU   200

2.0 Sequence 1242 from Patent EP2985353 NA coding protein psRNATarget
JB163578.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||**|||||||||||||||
targets:177   AUCAGAUGAUUUGCUUGCACGCUU   200

2.0 Sequence 1242 from Patent EP2559767 NA coding protein psRNATarget
HI403117.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||**|||||||||||||||
targets:177   AUCAGAUGAUUUGCUUGCACGCUU   200

2.0 Sequence 1242 from Patent EP2074227 NA coding protein psRNATarget
HI402933.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||**|||||||||||||||
targets:183   AUCAGAUGAUUUGCUUGCACGCUU   206

2.0 Sequence 1058 from Patent EP2074227 NA coding protein psRNATarget
JB163394.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||**|||||||||||||||
targets:183   AUCAGAUGAUUUGCUUGCACGCUU   206

2.0 Sequence 1058 from Patent EP2559767 NA coding protein psRNATarget
LQ235063.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  |||||||**|||||||||||||||
targets:183   AUCAGAUGAUUUGCUUGCACGCUU   206

2.0 Sequence 1058 from Patent EP2985353 NA coding protein psRNATarget
XM_008645849.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  *|||||*||*||||||||||||||
targets:2128   UUCAGAAUGCUUGCUUGCACGCUU   2151

2.0 PREDICTED: Zea mays putative AGC protein kinase family protein (LOC100383454), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020537890.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  *|||||*||*||||||||||||||
targets:2580   UUCAGAAUGCUUGCUUGCACGCUU   2603

2.0 PREDICTED: Zea mays probable serine/threonine protein kinase IREH1 (LOC103625948), transcript variant X1, mRNA NA coding protein psRNATarget
HI409214.1
ncRNA:24   UAG-UCUAACAAACGAACGUGCGAA   1
  *||-||||*|||||*||||||||||
targets:170   CUCUAGAUAGUUUGAUUGCACGCUU   194

2.5 Sequence 7339 from Patent EP2074227 NA coding protein psRNATarget
LQ241344.1
ncRNA:24   UAG-UCUAACAAACGAACGUGCGAA   1
  *||-||||*|||||*||||||||||
targets:170   CUCUAGAUAGUUUGAUUGCACGCUU   194

2.5 Sequence 7339 from Patent EP2985353 NA coding protein psRNATarget
JB169675.1
ncRNA:24   UAG-UCUAACAAACGAACGUGCGAA   1
  *||-||||*|||||*||||||||||
targets:170   CUCUAGAUAGUUUGAUUGCACGCUU   194

2.5 Sequence 7339 from Patent EP2559767 NA coding protein psRNATarget
LQ241182.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  ||*|*||*|||||=||||||||||
targets:184   AUAAAAUGGUUUGUUUGCACGCUU   207

2.5 Sequence 7177 from Patent EP2985353 NA coding protein psRNATarget
JB169513.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  ||*|*||*|||||=||||||||||
targets:184   AUAAAAUGGUUUGUUUGCACGCUU   207

2.5 Sequence 7177 from Patent EP2559767 NA coding protein psRNATarget
HI409052.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  ||*|*||*|||||=||||||||||
targets:184   AUAAAAUGGUUUGUUUGCACGCUU   207

2.5 Sequence 7177 from Patent EP2074227 NA coding protein psRNATarget
EU972964.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  ||*|*||*|||||=||||||||||
targets:2209   AUAAAAUGGUUUGUUUGCACGCUU   2232

2.5 Zea mays clone 390894 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001151629.1
ncRNA:24   UAGUCUAACAAACGAACGUGCGAA   1
  ||*|*||*|||||=||||||||||
targets:2209   AUAAAAUGGUUUGUUUGCACGCUU   2232

2.5 Zea mays uncharacterized LOC100278316 (si946092e03), mRNA NA coding protein psRNATarget
HI403251.1
ncRNA:24   UAG-UCUAACAAACGAACGUGCGAA   1
  *||-=|||*|||||*||||||||||
targets:174   CUCUGGAUGGUUUGGUUGCACGCUU   198

2.5 Sequence 1376 from Patent EP2074227 NA coding protein psRNATarget
JB163712.1
ncRNA:24   UAG-UCUAACAAACGAACGUGCGAA   1
  *||-=|||*|||||*||||||||||
targets:174   CUCUGGAUGGUUUGGUUGCACGCUU   198

2.5 Sequence 1376 from Patent EP2559767 NA coding protein psRNATarget
LQ235381.1
ncRNA:24   UAG-UCUAACAAACGAACGUGCGAA   1
  *||-=|||*|||||*||||||||||
targets:174   CUCUGGAUGGUUUGGUUGCACGCUU   198

2.5 Sequence 1376 from Patent EP2985353 NA coding protein psRNATarget
NM_001150809.1
ncRNA:24   UAG-UCUAACAAACGAACGUGCGAA   1
  *||-=|||*|||||*||||||||||
targets:1438   CUCUGGAUAGUUUGAUUGCACGCUU   1462

2.5 Zea mays uncharacterized LOC100277160 (LOC100277160), mRNA NA coding protein psRNATarget
EU967125.1
ncRNA:24   UAG-UCUAACAAACGAACGUGCGAA   1
  *||-=|||*|||||*||||||||||
targets:1438   CUCUGGAUAGUUUGAUUGCACGCUU   1462

2.5 Zea mays clone 299609 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020551490.1
ncRNA:24   UAG-UCUAACAAACGAACGUGCGAA   1
  *||-=|||*|||||*||||||||||
targets:168   CUCUGGAUAGUUUGAUUGCACGCUU   192

2.5 PREDICTED: Zea mays Galactose oxidase/kelch repeat superfamily protein (cl68462_1), transcript variant X4, mRNA NA coding protein psRNATarget
JB163801.1
ncRNA:24   UAG--UCUAACAAACGAACGUGCGAA   1
  *||--=|||*|||||*||||||||||
targets:174   CUCUGGGAUGGUUUGGUUGCACGCUU   199

2.5 Sequence 1465 from Patent EP2559767 NA coding protein psRNATarget
LQ235470.1
ncRNA:24   UAG--UCUAACAAACGAACGUGCGAA   1
  *||--=|||*|||||*||||||||||
targets:174   CUCUGGGAUGGUUUGGUUGCACGCUU   199

2.5 Sequence 1465 from Patent EP2985353 NA coding protein psRNATarget
HI403340.1
ncRNA:24   UAG--UCUAACAAACGAACGUGCGAA   1
  *||--=|||*|||||*||||||||||
targets:174   CUCUGGGAUGGUUUGGUUGCACGCUU   199

2.5 Sequence 1465 from Patent EP2074227 NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.