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BaseInfo

ncRNA ID	novel_zma_miR4241
Species	Zea mays
Class	miRNA
Genome position	Chr2:131024473-131024596 [-]
Reference genome	RefGen_v4
Source	SRR2287160;SRR2287165
Length	24
Mature sequence(if miRNA)	101 - AGGACUGAUUUGGUGAUUAGGGAU - 124
Stem-loop(if miRNA)	--   AC             A           AGUAUCCAUA            C     A     A   AGG  UGAUUUGGUGAUU GGGAUCCCAAG          GGGGAGGAAUCC CUUGC AUUUA U   |||  ||||||||||||| |||||||||||          |||||||||||| ||||| |||||   UCC  ACUAAACCACUAG CCCUAGGGUUC          CCCUUCUUUAGG GGACG UAAAU U AA   CA             G           ----------            A     A     U
Stem-loop sequence	AGGACUGAUUUGGUGAUUAGGGAUCCCAAGAGUAUCCAUAGGGGAGGAAUCCCCUUGCAAUUUAAUUUUAAAUAGCAGGAGGAUUUCUUCCCCUUGGGAUCCCGGAUCACCAAAUCAACCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552825.1	ncRNA:24   UAGGGAUUAGUGGUUUAGUCAGGA   1   |||||||||||||||||||||||| targets:4775   AUCCCUAAUCACCAAAUCAGUCCU   4798 Target Full Sequence	0.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681392.2	ncRNA:24   UAGGGAUUAGUGGUUUAGUCAGGA   1   |||||||||||||||||||||||| targets:4684   AUCCCUAAUCACCAAAUCAGUCCU   4707 Target Full Sequence	0.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008681394.2	ncRNA:24   UAGGGAUUAGUGGUUUAGUCAGGA   1   |||||||||||||||||||||||| targets:4510   AUCCCUAAUCACCAAAUCAGUCCU   4533 Target Full Sequence	0.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY108273.1	ncRNA:24   UAGGGAUUAGUGGUUUAGUCAGGA   1   |||||||*|||||||||||||||| targets:454   AUCCCUAUUCACCAAAUCAGUCCU   477 Target Full Sequence	1.0	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
XM_020545246.1	ncRNA:24   UAGGGAUUAGUGGUUUAGUCAGGA   1   ||||||||||||||||||||*||* targets:152   AUCCCUAAUCACCAAAUCAGCCCG   175 Target Full Sequence	2.5	PREDICTED: Zea mays methyl binding domain113 (cl26423_1), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020538171.1	ncRNA:24   UAGGGAUUAGUGGUUUAGUCAGGA   1   =|||||=|||||||||||||*||| targets:1   GUCCCUGAUCACCAAAUCAGACCU   24 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109939824 (LOC109939824), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001196706.1	ncRNA:24   UAGGGAUUAGUGGUUUAGUCAGGA   1   |||||*==|||||||||||||||| targets:866   AUCCCCGGUCACCAAAUCAGUCCU   889 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100502229), mRNA	NA	coding protein	psRNATarget
BT087480.1	ncRNA:24   UAGGGAUUAGUGGUUUAGUCAGGA   1   |||||*==|||||||||||||||| targets:866   AUCCCCGGUCACCAAAUCAGUCCU   889 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0089I03 mRNA, complete cds	NA	coding protein	psRNATarget
EZ056613.1	ncRNA:24   UAGGGAUUAGUGGUUUAGUCAGGA   1   |||||*==|||||||||||||||| targets:159   AUCCCCGGUCACCAAAUCAGUCCU   182 Target Full Sequence	3.0	TSA: Zea mays contig57735, mRNA sequence	NA	coding protein	psRNATarget
EU945757.1	ncRNA:24   UAGGGAUUAGUGGUUUAGUCAGGA   1   *|==||==|||||||||||||||| targets:69   UUUUCUGGUCACCAAAUCAGUCCU   92 Target Full Sequence	2.0	Zea mays clone 284734 mRNA sequence	NA	coding protein	psRNATarget
BT066676.1	ncRNA:24   UAGGGAUUAGUGGUUUAGUCAGGA   1   ||||||||*|||||||||||*||| targets:1339   AUCCCUAACCACCAAAUCAGCCCU   1362 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0044C22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175907.1	ncRNA:24   UAGGGAUUAGUGGUUUAGUCAGGA   1   ||||||||*|||||||||||*||| targets:1339   AUCCCUAACCACCAAAUCAGCCCU   1362 Target Full Sequence	2.5	Zea mays CCAAT-HAP2 transcription factor (CA2P12), mRNA	NA	coding protein	psRNATarget
NM_001346674.1	ncRNA:24   UA-GGGAUUAGUGGUUUAGUCAGGA   1   ||-||=||||||||||||||*|||| targets:339   AUACCUUAAUCACCAAAUCAAUCCU   363 Target Full Sequence	1.5	Zea mays uncharacterized LOC103650254 (LOC103650254), mRNA	NA	coding protein	psRNATarget
NM_001328562.1	ncRNA:24   UA-GGGAUUAGUGGUUUAGUCAGGA   1   ||-||=||||||||||||||*|||| targets:336   AUACCUUAAUCACCAAAUCAAUCCU   360 Target Full Sequence	1.5	Zea mays uncharacterized LOC103650254 (LOC103650254), mRNA	NA	coding protein	psRNATarget
BT065778.1	ncRNA:24   UAGGGAUUAGUGGUUUAGUCAGGA   1   *|=||||*||||||||||||||=| targets:1570   UUUCCUAUUCACCAAAUCAGUCUU   1593 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0089M21 mRNA, complete cds	NA	coding protein	psRNATarget
AJ549215.1	ncRNA:24   UAGGGAUUAGUGGUUUAGUCAGGA   1   *|=||||*||||||||||||||=| targets:1514   UUUCCUAUUCACCAAAUCAGUCUU   1537 Target Full Sequence	2.5	Zea mays mRNA for chloroplast SRP receptor cpFtsY precursor (csr1 gene)	NA	coding protein	psRNATarget
NM_001112262.1	ncRNA:24   UAGGGAUUAGUGGUUUAGUCAGGA   1   *|=||||*||||||||||||||=| targets:1478   UUUCCUAUUCACCAAAUCAGUCUU   1501 Target Full Sequence	2.5	Zea mays chloroplast srp54 receptor 1 (csr1), mRNA	NA	coding protein	psRNATarget
BT083928.1	ncRNA:24   UAGGGAUUAGUGGUUUAGUCAGGA   1   *|=||||*||||||||||||||=| targets:1511   UUUCCUAUUCACCAAAUCAGUCUU   1534 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0055I18 mRNA, complete cds	NA	coding protein	psRNATarget
EU970324.1	ncRNA:24   UAGGGAUUAGUGGUUUAGUCAGGA   1   *|=||||*||||||||||||||=| targets:1521   UUUCCUAUUCACCAAAUCAGUCUU   1544 Target Full Sequence	2.5	Zea mays clone 343352 cell division protein ftsY mRNA, complete cds	NA	coding protein	psRNATarget