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BaseInfo

ncRNA ID osa-miRf10021-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 22
Mature sequence(if miRNA) NA - UCAGCGCCAUGCUAUUUGGCGC - NA
Stem-loop(if miRNA)        A      UGUCAAC            ------   UACCACCGUGGAUG
ACACCUC GCGCCA       UGGCGCUGAAUG      CCG              G
||||||| ||||||       ||||||||||||      |||              G
UGUGGAG CGCGGU       ACCGCGACUUAC      CCG              A
       C      UUAUCGU            AUACAA   UACGACUGAAUCGG
Stem-loop sequence ACACCUCAGCGCCAUGUCAACUGGCGCUGAAUGCCGUACCACCGUGGAUGGGAGGCUAAGUCAGCAUGCCAACAUACAUUCAGCGCCAUGCUAUUUGGCGCCGAGGUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK105004.2
ncRNA:22   CGCGGUUUAUCGUACCGCGACU   1
  |||||||||||=||||||||||
targets:297   GCGCCAAAUAGUAUGGCGCUGA   318

1.5 Oryza sativa Japonica Group cDNA clone:001-006-B03, full insert sequence NA coding protein psRNATarget
XM_015766258.1
ncRNA:22   CGCGGUUUAUCGUACCGCGACU   1
  |||||||||||=||||||||||
targets:1122   GCGCCAAAUAGUAUGGCGCUGA   1143

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269164 (LOC9269164), mRNA uncharacterized LOC9269164(LOC9269164) coding protein psRNATarget
XM_015770638.1
ncRNA:22   CGCGGUUUAUCGUACCGCGACU   1
  |||*||||||||||||||||||
targets:415   GCGGCAAAUAGCAUGGCGCUGA   436

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329649 (LOC4329649), transcript variant X2, mRNA uncharacterized LOC4329649(LOC4329649) coding protein psRNATarget
XM_015770637.1
ncRNA:22   CGCGGUUUAUCGUACCGCGACU   1
  |||*||||||||||||||||||
targets:415   GCGGCAAAUAGCAUGGCGCUGA   436

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329649 (LOC4329649), transcript variant X1, mRNA uncharacterized LOC4329649(LOC4329649) coding protein psRNATarget