Search result

BaseInfo

ncRNA ID	novel_zma_miR4232
Species	Zea mays
Class	miRNA
Genome position	Chr1:30132505-30132624 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - ACAUUUAGGCACGAACCAAACAGC - 24
Stem-loop(if miRNA)	--          AA         -         CUGCCUAACUUUUC               C   A   UGUUUGGUUU  UGCCUAAGU UGCCACACU              UGCCUAAGGUUAGUU UUC A   ||||||||||  ||||||||| |||||||||              ||||||||||||||| ||| U   ACAAACCAAG  ACGGAUUUA ACGGUGUGA              ACGGAUUCCAAUCAG AAG U CG          -C         C         -------------A               C   U
Stem-loop sequence	UGUUUGGUUUAAUGCCUAAGUUGCCACACUCUGCCUAACUUUUCUGCCUAAGGUUAGUUCUUCAAUUUGAACGACUAACCUUAGGCAAAGUGUGGCACAUUUAGGCACGAACCAAACAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU967316.1	ncRNA:24   CGACAAACCAAGCACGGAUUUACA   1   |||||||||||||||*|||||||| targets:483   GCUGUUUGGUUCGUGGCUAAAUGU   506 Target Full Sequence	1.5	Zea mays clone 301383 diphthamide biosynthesis protein 3 mRNA, complete cds	NA	coding protein	psRNATarget
AY104775.1	ncRNA:24   CGACAAACCAAGCACGGAUUUACA   1   |||||||||||||||*|||||||| targets:548   GCUGUUUGGUUCGUGGCUAAAUGU   571 Target Full Sequence	1.5	Zea mays PCO061308 mRNA sequence	NA	coding protein	psRNATarget
XM_008649194.2	ncRNA:24   CGACAAACCAAGCACGGAUUUACA   1   |||||||||||||||*|||||||| targets:1014   GCUGUUUGGUUCGUGGCUAAAUGU   1037 Target Full Sequence	1.5	PREDICTED: Zea mays D-aminoacyl-tRNA deacylase (AY104775), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035068.1	ncRNA:24   CGACAAACCAAGCACGGAUUUACA   1   |||||||||||||||*|||||||| targets:1154   GCUGUUUGGUUCGUGGCUAAAUGU   1177 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0035J23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138873.1	ncRNA:24   CGACAAACCAAGCACGGAUUUACA   1   |||||||||||||||*|||||||| targets:1155   GCUGUUUGGUUCGUGGCUAAAUGU   1178 Target Full Sequence	1.5	Zea mays D-aminoacyl-tRNA deacylase (AY104775), mRNA	NA	coding protein	psRNATarget
BT036147.1	ncRNA:24   CGACAAACCAAGCACGGAUUUACA   1   |||||||||||||||*|||||||| targets:1155   GCUGUUUGGUUCGUGGCUAAAUGU   1178 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0098I08 mRNA, complete cds	NA	coding protein	psRNATarget
AY111895.1	ncRNA:24   CG-ACAAACCAAGCACGGAUUUACA   1   ||-||||||*||||||*|||||||| targets:260   GCAUGUUUGAUUCGUGACUAAAUGU   284 Target Full Sequence	2.5	Zea mays CL41465_1 mRNA sequence	NA	coding protein	psRNATarget