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BaseInfo

ncRNA ID novel_zma_miR4231
Species Zea mays
Class miRNA
Genome position Chr2:221871062-221871115 [+]
Reference genome RefGen_v4
Source SRR2287160
Length 24
Mature sequence(if miRNA) 31 - UUGGAGGGGAUUGAUACAGAUUGA - 54
Stem-loop(if miRNA) ------A  UUU      A          A
       GU   UCGGUU UUUUUAAUCC U
       ||   |||||| ||||||||||
       CA   AGUUAG GGAGGUUAGG A
AGUUAGA  --U      G          U
Stem-loop sequence AGUUUUUCGGUUAUUUUUAAUCCAUAUGGAUUGGAGGGGAUUGAUACAGAUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020539810.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  ||||||*|||||||||||||||||
targets:689   UCAAUCCGUAUCAAUCCCCUCCAA   712

1.0 PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA NA coding protein psRNATarget
XM_008658561.2
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||*|||||||||||||||||
targets:291   CCAAUCCGUAUCAAUCCCCUCCAA   314

1.0 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||*|||||||||||||||||
targets:1970   CCAAUCCGUAUCAAUCCCCUCCAA   1993

1.0 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||*|||||||||||||||||
targets:1970   CCAAUCCGUAUCAAUCCCCUCCAA   1993

1.0 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_020545207.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||*|||||||||||||||||
targets:12   CCAAUCCGUAUCAAUCCCCUCCAA   35

1.0 PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA NA coding protein psRNATarget
EU956568.1
ncRNA:24   AG-UUAGACAUAGUUAGGGGAGGUU   1
  ||-||||*|||||||||||||||||
targets:1619   UCUAAUCCGUAUCAAUCCCCUCCAA   1643

1.0 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
BT055069.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||*|||||||||||||=|||
targets:966   CCAAUCCGUAUCAAUCCCCUUCAA   989

2.5 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
BT041454.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||*|||||||||||||=|||
targets:1487   CCAAUCCGUAUCAAUCCCCUUCAA   1510

2.5 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
NM_001148011.2
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||*|||||||||||||=|||
targets:1487   CCAAUCCGUAUCAAUCCCCUUCAA   1510

2.5 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
AY105910.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||*|||||||||||||=|||
targets:1473   CCAAUCCGUAUCAAUCCCCUUCAA   1496

2.5 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
BT040193.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||*|||||||||||||=|||
targets:1455   CCAAUCCGUAUCAAUCCCCUUCAA   1478

2.5 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
BT064472.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||*|||||||||||||=|||
targets:1411   CCAAUCCGUAUCAAUCCCCUUCAA   1434

2.5 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
BT055467.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||*|||||||||||||||=|
targets:1075   CCAAUCCGUAUCAAUCCCCUCCGA   1098

2.5 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
BT055467.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||*||||=||||||||||||
targets:1188   CCAAUCCGUAUUAAUCCCCUCCAA   1211

2.5 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||*|||||||||||||||=|
targets:1037   CCAAUCCGUAUCAAUCCCCUCCGA   1060

2.5 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||*||||=||||||||||||
targets:1150   CCAAUCCGUAUUAAUCCCCUCCAA   1173

2.5 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
EU953075.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||*|||||||||=|||||||
targets:998   CCAAUCCGUAUCAAUCUCCUCCAA   1021

2.5 Zea mays clone 1380292 mRNA sequence NA coding protein psRNATarget
BT064935.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||*|||||||||||=|||||
targets:826   CCAAUCCGUAUCAAUCCCUUCCAA   849

2.5 Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds NA coding protein psRNATarget
EU972046.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||*||||||||||||||=||
targets:774   CCAAUCCGUAUCAAUCCCCUCUAA   797

2.5 Zea mays clone 373861 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001156482.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  ||||||*|||||||||*|||||||
targets:878   UCAAUCCGUAUCAAUCACCUCCAA   901

2.5 Zea mays threonine endopeptidase (LOC100283581), mRNA NA coding protein psRNATarget
EU965203.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  ||||||*|||||||||*|||||||
targets:878   UCAAUCCGUAUCAAUCACCUCCAA   901

2.5 Zea mays clone 284456 threonine endopeptidase mRNA, complete cds NA coding protein psRNATarget
NM_001348011.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  ||||||**||||||||||||||||
targets:435   UCAAUCCAUAUCAAUCCCCUCCAA   458

2.0 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
XM_008666525.2
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||**||||||||||||||||
targets:907   CCAAUCCAUAUCAAUCCCCUCCAA   930

2.0 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
EU959345.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||**||||||||||||||||
targets:835   CCAAUCCAUAUCAAUCCCCUCCAA   858

2.0 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959258.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||**||||||||||||||||
targets:834   CCAAUCCAUAUCAAUCCCCUCCAA   857

2.0 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959055.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||**||||||||||||||||
targets:836   CCAAUCCAUAUCAAUCCCCUCCAA   859

2.0 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
BT062922.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *|||||**||||||||||||||||
targets:888   CCAAUCCAUAUCAAUCCCCUCCAA   911

2.0 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
XM_008649902.2
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *=|||=|*|*||||||||||||||
targets:1670   AUAAUUUCUCUCAAUCCCCUCCAA   1693

3.0 PREDICTED: Zea mays Electron carrier/ iron ion binding protein (cl22526_1), transcript variant X1, mRNA NA coding protein psRNATarget
BT067571.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *=|||=|*|*||||||||||||||
targets:1627   AUAAUUUCUCUCAAUCCCCUCCAA   1650

3.0 Zea mays full-length cDNA clone ZM_BFc0088A12 mRNA, complete cds NA coding protein psRNATarget
BT064254.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *=|||=|*|*||||||||||||||
targets:1640   AUAAUUUCUCUCAAUCCCCUCCAA   1663

3.0 Zea mays full-length cDNA clone ZM_BFc0153A19 mRNA, complete cds NA coding protein psRNATarget
NM_001349063.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *=|||=|*|*||||||||||||||
targets:1640   AUAAUUUCUCUCAAUCCCCUCCAA   1663

3.0 Zea mays Electron carrier/ iron ion binding protein (cl22526_1), mRNA NA coding protein psRNATarget
EU959053.1
ncRNA:24   AGUUAGACAUAGUUAGGGGAGGUU   1
  *||**|**||||||||||||||||
targets:834   CCAMYCCAUAUCAAUCCCCUCCAA   857

2.0 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
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