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BaseInfo

ncRNA ID	novel_zma_miR4228
Species	Zea mays
Class	miRNA
Genome position	Chr2:204249528-204249646 [+]
Reference genome	RefGen_v4
Source	SRR2287160
Length	24
Mature sequence(if miRNA)	96 - UUGGUUGCAAUGAUAGGACGGGAU - 119
Stem-loop(if miRNA)	--   -       UUUG    -   GG        UUUUGCUGAAAU        C     -   G     CCC UUCUGUU    UGCG CCA  GACGUAUA            GAUACUAC AUAGC UUU CGU   ||| |||||||    |||| |||  ||||||||            |||||||| ||||| ||| ||G   GGG AGGAUAG    ACGU GGU  UUGCGUGU            UUGUGGUG UAUCG GGA GCC UA   C       --UA    U   --        ----------CU        -     U   G
Stem-loop sequence	CCCUUCUGUUUUUGUGCGCCAGGGACGUAUAUUUUGCUGAAAUGAUACUACCAUAGCUUUGCGUGCCGGAGGUGCUAUGUGGUGUUUCUGUGCGUUUGGUUGCAAUGAUAGGACGGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI405809.1	ncRNA:24   UAGGGCAGGAUAGUAACGUUGGUU   1   ||||||||||=||||||||||||| targets:150   AUCCCGUCCUGUCAUUGCAACCAA   173 Target Full Sequence	1.0	Sequence 3934 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237939.1	ncRNA:24   UAGGGCAGGAUAGUAACGUUGGUU   1   ||||||||||=||||||||||||| targets:150   AUCCCGUCCUGUCAUUGCAACCAA   173 Target Full Sequence	1.0	Sequence 3934 from Patent EP2985353	NA	coding protein	psRNATarget
JB166270.1	ncRNA:24   UAGGGCAGGAUAGUAACGUUGGUU   1   ||||||||||=||||||||||||| targets:150   AUCCCGUCCUGUCAUUGCAACCAA   173 Target Full Sequence	1.0	Sequence 3934 from Patent EP2559767	NA	coding protein	psRNATarget
EU947942.1	ncRNA:24   UAGGGCAGGAUAGUAACGUUGGUU   1   =|||=|||||=||||||||||||| targets:240   GUCCUGUCCUGUCAUUGCAACCAA   263 Target Full Sequence	1.0	Zea mays clone 366958 mRNA sequence	NA	coding protein	psRNATarget
XM_020552549.1	ncRNA:24   UAGGGCAGGAUAGUAACGUUGGUU   1   =|||||||||=||||||=|||||| targets:905   GUCCCGUCCUGUCAUUGUAACCAA   928 Target Full Sequence	2.5	PREDICTED: Zea mays dentin sialophosphoprotein-related (LOC103653323), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020552546.1	ncRNA:24   UAGGGCAGGAUAGUAACGUUGGUU   1   =|||||||||=||||||=|||||| targets:905   GUCCCGUCCUGUCAUUGUAACCAA   928 Target Full Sequence	2.5	PREDICTED: Zea mays dentin sialophosphoprotein-related (LOC103653323), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008652671.2	ncRNA:24   UAGGGCAGGAUAGUAACGUUGGUU   1   =||||*||||||=||||||||||| targets:930   GUCCCAUCCUAUUAUUGCAACCAA   953 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100193379), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008652672.2	ncRNA:24   UAGGGCAGGAUAGUAACGUUGGUU   1   =||||*||||||=||||||||||| targets:825   GUCCCAUCCUAUUAUUGCAACCAA   848 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100193379), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545693.1	ncRNA:24   UAGGGCAGGAUAGUAACGUUGGUU   1   |||==||||*=||||||||||||| targets:3626   AUCUUGUCCCGUCAUUGCAACCAA   3649 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103641151 (LOC103641151), mRNA	NA	coding protein	psRNATarget
EZ084566.1	ncRNA:24   UAGGGCAGGAUAGUAACGUUGGUU   1   =||=*||||||||||||*|||||| targets:41   GUCUAGUCCUAUCAUUGGAACCAA   64 Target Full Sequence	1.5	TSA: Zea mays contig20210, mRNA sequence	NA	coding protein	psRNATarget