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BaseInfo

ncRNA ID novel_zma_miR4227
Species Zea mays
Class miRNA
Genome position Chr2:200326545-200326641 [+]
Reference genome RefGen_v4
Source SRR2287160
Length 24
Mature sequence(if miRNA) 1 - AUUGGAGUGGAUUGAGGUGGUAUG - 24
Stem-loop(if miRNA) AUUGGAGU            UA  U            U U   A    UUAA
        GGAUUGAGGUGG  UG GGUGUAUUGAAG G AAU UGAA    U
        ||||||||||||  || |||||||||||| | ||| ||||    U
        CCUAACUUCACC  AC UCACAUAAUUUC C UUA ACUU    U
--------            UA  U            - C   -    UUUU
Stem-loop sequence AUUGGAGUGGAUUGAGGUGGUAUGUGGUGUAUUGAAGUGUAAUAUGAAUUAAUUUUUUUUUCAAUUCCCUUUAAUACACUUCAAUCCACUUCAAUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ238263.1
ncRNA:24   GUAUGGUGGAGUUAGGUGAGGUUA   1
  ||||||||||||||||||||||||
targets:83   CAUACCACCUCAAUCCACUCCAAU   106

0.0 Sequence 4258 from Patent EP2985353 NA coding protein psRNATarget
JB166594.1
ncRNA:24   GUAUGGUGGAGUUAGGUGAGGUUA   1
  ||||||||||||||||||||||||
targets:83   CAUACCACCUCAAUCCACUCCAAU   106

0.0 Sequence 4258 from Patent EP2559767 NA coding protein psRNATarget
HI406133.1
ncRNA:24   GUAUGGUGGAGUUAGGUGAGGUUA   1
  ||||||||||||||||||||||||
targets:83   CAUACCACCUCAAUCCACUCCAAU   106

0.0 Sequence 4258 from Patent EP2074227 NA coding protein psRNATarget
EU960447.1
ncRNA:24   GUAUGGUGGAGUUAGGUGAGGUUA   1
  ||||||||||||||||||||||||
targets:1212   CAUACCACCUCAAUCCACUCCAAU   1235

0.0 Zea mays clone 224969 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001150023.1
ncRNA:24   GUAUGGUGGAGUUAGGUGAGGUUA   1
  ||||||||||||||||||||||||
targets:1212   CAUACCACCUCAAUCCACUCCAAU   1235

0.0 Zea mays uncharacterized LOC100276173 (LOC100276173), mRNA NA coding protein psRNATarget
EU943240.1
ncRNA:24   GUAUGGUGGAGUUAGGUGAGGUUA   1
  =|||||||||||||||||||||||
targets:570   UAUACCACCUCAAUCCACUCCAAU   593

0.0 Zea mays clone 1589496 mRNA sequence NA coding protein psRNATarget
EU965489.1
ncRNA:24   GUAUGGUGGAGUUAGGUGAGGUUA   1
  =|||||||||||||||||||||||
targets:1108   UAUACCACCUCAAUCCACUCCAAU   1131

0.0 Zea mays clone 286392 mRNA sequence NA coding protein psRNATarget
BT066084.1
ncRNA:24   GUAUGGUGGAGUUAGGUGAGGUUA   1
  ||||||||||||||=|||||||||
targets:1233   CAUACCACCUCAAUUCACUCCAAU   1256

1.5 Zea mays full-length cDNA clone ZM_BFb0286M14 mRNA, complete cds NA coding protein psRNATarget
XM_008667020.2
ncRNA:24   GUAUGGUGGAGUUAGGUGAGGUUA   1
  =|||||||||||||||||||||||
targets:2077   UAUACCACCUCAAUCCACUCCAAU   2100

0.0 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103643852), mRNA NA coding protein psRNATarget
XM_008672733.2
ncRNA:24   GUAU-GGUGGAGUUAGGUGAGGUUA   1
  |||*-||||||||||||*|||||||
targets:2425   CAUUUCCACCUCAAUCCUCUCCAAU   2449

1.5 PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA NA coding protein psRNATarget
XM_020547122.1
ncRNA:24   GUAUGGUGGAGUUAGGUGAGGUUA   1
  *||*||||||=|||||*|||||||
targets:288   AAUUCCACCUUAAUCCCCUCCAAU   311

2.5 PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547119.1
ncRNA:24   GUAUGGUGGAGUUAGGUGAGGUUA   1
  *||*||||||=|||||*|||||||
targets:396   AAUUCCACCUUAAUCCCCUCCAAU   419

2.5 PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X1, mRNA NA coding protein psRNATarget
EU941872.1
ncRNA:24   GUAUGGUGGAGUUAGGUGAGGUUA   1
  **|*||||||||||||*|||||||
targets:92   AUUUCCACCUCAAUCCUCUCCAAU   115

1.5 Zea mays clone 1471472 mRNA sequence NA coding protein psRNATarget
XM_008667123.2
ncRNA:24   GUAUGGUGGAGUUAGGUGAGGUUA   1
  *=***=||||||||||||||||||
targets:2373   GGCUGUACCUCAAUCCACUCCAAU   2396

1.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008667124.2
ncRNA:24   GUAUGGUGGAGUUAGGUGAGGUUA   1
  *=***=||||||||||||||||||
targets:2395   GGCUGUACCUCAAUCCACUCCAAU   2418

1.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X4, mRNA NA coding protein psRNATarget
HI406953.1
ncRNA:24   GUAUGGUGGAGUUAGGUGAGGUUA   1
  =|*|||**||||||||||||||||
targets:2   UAAACCCACUCAAUCCACUCCAAU   25

2.0 Sequence 5078 from Patent EP2074227 NA coding protein psRNATarget
JB167414.1
ncRNA:24   GUAUGGUGGAGUUAGGUGAGGUUA   1
  =|*|||**||||||||||||||||
targets:2   UAAACCCACUCAAUCCACUCCAAU   25

2.0 Sequence 5078 from Patent EP2559767 NA coding protein psRNATarget
LQ239083.1
ncRNA:24   GUAUGGUGGAGUUAGGUGAGGUUA   1
  =|*|||**||||||||||||||||
targets:2   UAAACCCACUCAAUCCACUCCAAU   25

2.0 Sequence 5078 from Patent EP2985353 NA coding protein psRNATarget
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