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BaseInfo

ncRNA ID novel_zma_miR4222
Species Zea mays
Class miRNA
Genome position Chr1:147319107-147319273 [+]
Reference genome RefGen_v4
Source SRR2287160;SRR2287162;SRR5451003;SRR5451004;SRR5451005;SRR5451006
Length 24
Mature sequence(if miRNA) 1 - AGAGACGGCCGUAGGAAGUUAGCA - 24
Stem-loop(if miRNA) --    AC                    CA              C  -CCUC  C            -U    G   -  -    C
  AGAG  GGCCGUAGGAAGUUAGCAUG  CAGCUAACUUCCUA GA     CU UAGGAAGUUAGC  UUCA UUG CU CAUC G
  ||||  ||||||||||||||||||||  |||||||||||||| ||     || ||||||||||||  |||| ||| || ||||
  UCUC  CCGGCAUCCUUCAAUCGUAC  GUCGAUUGAAGGAU CU     GG GUUCUUCAAUCG  GAGU AAC GG GUGG U
GA    CU                    AC              -  CCGCC  C            CC    A   U  C    G
Stem-loop sequence AGAGACGGCCGUAGGAAGUUAGCAUGCACAGCUAACUUCCUACGACCUCCUCUAGGAAGUUAGCUUUCAGUUGCUCAUCCGUGGGUGCGGUCAAAUGAGCCGCUAACUUCUUGCGGCCGCCUCUAGGAAGUUAGCUGCACAUGCUAACUUCCUACGGCCUCCUCUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT086229.2
ncRNA:24   ACGAUUGAAGGAUGCCGGCAGAGA   1
  |||||||||=|||||*||||||||
targets:1252   UGCUAACUUUCUACGACCGUCUCU   1275

2.5 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget