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BaseInfo

ncRNA ID	novel_zma_miR4219
Species	Zea mays
Class	miRNA
Genome position	Chr1:9113834-9114028 [+]
Reference genome	RefGen_v4
Source	SRR2287160
Length	24
Mature sequence(if miRNA)	172 - GUUCAUUUAGAGAACUGUUGGAAA - 195
Stem-loop(if miRNA)	--                  AU GG  G   U    ---U     -     U  A   AAAAAAUAA UCACAAAAACUAUAUAAUGCAGUCAAUAUUUU   UCCAAUAGUUCUCUAAAU  A  UU UAA UUUG    UUUGU AUCUA CC CAU         G                                U   ||||||||||||||||||  |  || ||| ||||    ||||| ||||| || |||         |                                U   AGGUUGUCAAGAGAUUUA  U  AA AUU AAAU    GAACA UAGAU GG GUA         G                                G AA                  CU GA  G   U    UGUU     G     U  A   --AAAGAGA AUGUAAACCGUUAGUAAAUUGUUGAGGGAUUU
Stem-loop sequence	UCCAAUAGUUCUCUAAAUAUAGGUUGUAAUUUUGUUUUGUAUCUAUCCACAUAAAAAAUAAGUCACAAAAACUAUAUAAUGCAGUCAAUAUUUUUUGUUUAGGGAGUUGUUAAAUGAUUGCCAAAUGUAGAGAGAAAAUGAGGUUAGAUGACAAGUUGUUAAAUUUAGAAAGUUCAUUUAGAGAACUGUUGGAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548642.1	ncRNA:24   AA-AGGUUGUCAAGAGAUUUACUUG   1   ||-|||||||||||||||||||||| targets:2773   UUCUCCAACAGUUCUCUAAAUGAAC   2797 Target Full Sequence	0.0	PREDICTED: Zea mays ubiquitin-like-specific protease ESD4 (LOC103647934), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669572.2	ncRNA:24   AA-AGGUUGUCAAGAGAUUUACUUG   1   ||-|||||||||||||||||||||| targets:2737   UUCUCCAACAGUUCUCUAAAUGAAC   2761 Target Full Sequence	0.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669570.2	ncRNA:24   AA-AGGUUGUCAAGAGAUUUACUUG   1   ||-|||||||||||||||||||||| targets:2527   UUCUCCAACAGUUCUCUAAAUGAAC   2551 Target Full Sequence	0.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547655.1	ncRNA:24   AA-AGGUUGUCAAGAGAUUUACUUG   1   ||-|||||||||||||||||||||| targets:2483   UUCUCCAACAGUUCUCUAAAUGAAC   2507 Target Full Sequence	0.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT054396.1	ncRNA:24   AA-AGGUUGUCAAGAGAUUUACUUG   1   ||-|||||||||||||||||||||| targets:1330   UUCUCCAACAGUUCUCUAAAUGAAC   1354 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0030F12 mRNA, complete cds	NA	coding protein	psRNATarget
EZ085047.1	ncRNA:24   AAAGGUUGUCAAGAGAUUUACUUG   1   |**||||||||||||||||||||| targets:50   UCACCAACAGUUCUCUAAAUGAAC   73 Target Full Sequence	0.0	TSA: Zea mays contig20691, mRNA sequence	NA	coding protein	psRNATarget