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BaseInfo

ncRNA ID	novel_zma_miR4206
Species	Zea mays
Class	miRNA
Genome position	Chr1:93517288-93517389 [-]
Reference genome	RefGen_v4
Source	SRR2287160;SRR2287164
Length	24
Mature sequence(if miRNA)	79 - UGUAUUGGAGUGGAUUGAGGUGGU - 102
Stem-loop(if miRNA)	--UGU                   -GUACA   U U       U UA U  GA      AUUGGAGUGGAUUGAGGUG      AGG G AUUGAAG G  A AU  A      |||||||||||||||||||      ||| | ||||||| |  | ||      UAACUUCACCUAACUUCAC      UCC C UAACUUU C  U UA  C UUCCC                   AUAAAA   - -       - CC U  AU
Stem-loop sequence	UGUAUUGGAGUGGAUUGAGGUGGUACAAGGUGUAUUGAAGUGUAAUAUGAACUAAUUUCCCUUUCAAUCCCUAAAAUACACUUCAAUCCACUUCAAUCCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU943240.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   |||||||||||||||||||||*|| targets:573   ACCACCUCAAUCCACUCCAAUCCA   596 Target Full Sequence	1.5	Zea mays clone 1589496 mRNA sequence	NA	coding protein	psRNATarget
EU965489.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   |||||||||||||||||||||*|| targets:1111   ACCACCUCAAUCCACUCCAAUCCA   1134 Target Full Sequence	1.5	Zea mays clone 286392 mRNA sequence	NA	coding protein	psRNATarget
XM_008667020.2	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   |||||||||||||||||||||*|| targets:2080   ACCACCUCAAUCCACUCCAAUCCA   2103 Target Full Sequence	1.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103643852), mRNA	NA	coding protein	psRNATarget
EU960447.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   ||||||||||||||||||||||*= targets:1215   ACCACCUCAAUCCACUCCAAUAAG   1238 Target Full Sequence	2.5	Zea mays clone 224969 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150023.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   ||||||||||||||||||||||*= targets:1215   ACCACCUCAAUCCACUCCAAUAAG   1238 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276173 (LOC100276173), mRNA	NA	coding protein	psRNATarget
JB166594.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   |||||||||||||||||||||*|= targets:86   ACCACCUCAAUCCACUCCAAUCCG   109 Target Full Sequence	2.5	Sequence 4258 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238263.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   |||||||||||||||||||||*|= targets:86   ACCACCUCAAUCCACUCCAAUCCG   109 Target Full Sequence	2.5	Sequence 4258 from Patent EP2985353	NA	coding protein	psRNATarget
HI406133.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   |||||||||||||||||||||*|= targets:86   ACCACCUCAAUCCACUCCAAUCCG   109 Target Full Sequence	2.5	Sequence 4258 from Patent EP2074227	NA	coding protein	psRNATarget
HI403033.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   **||||||||||||||=||||||| targets:61   UACACCUCAAUCCACUUCAAUACA   84 Target Full Sequence	1.5	Sequence 1158 from Patent EP2074227	NA	coding protein	psRNATarget
JB163494.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   **||||||||||||||=||||||| targets:61   UACACCUCAAUCCACUUCAAUACA   84 Target Full Sequence	1.5	Sequence 1158 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235163.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   **||||||||||||||=||||||| targets:61   UACACCUCAAUCCACUUCAAUACA   84 Target Full Sequence	1.5	Sequence 1158 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020549588.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUA-UGU   1   **||=||||||||||||||||-||| targets:1429   UACAUCUCAAUCCACUCCAAUCACA   1453 Target Full Sequence	3.0	PREDICTED: Zea mays major facilitator superfamily defense 1 (mfsd1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235450.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   **||||*|||||||||=||||||| targets:61   UACACCCCAAUCCACUUCAAUACA   84 Target Full Sequence	2.5	Sequence 1445 from Patent EP2985353	NA	coding protein	psRNATarget
JB163782.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   **||||*|||||||||=||||||| targets:61   UACACCCCAAUCCACUUCAAUACA   84 Target Full Sequence	2.5	Sequence 1446 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235451.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   **||||*|||||||||=||||||| targets:61   UACACCCCAAUCCACUUCAAUACA   84 Target Full Sequence	2.5	Sequence 1446 from Patent EP2985353	NA	coding protein	psRNATarget
JB163781.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   **||||*|||||||||=||||||| targets:61   UACACCCCAAUCCACUUCAAUACA   84 Target Full Sequence	2.5	Sequence 1445 from Patent EP2559767	NA	coding protein	psRNATarget
HI403321.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   **||||*|||||||||=||||||| targets:61   UACACCCCAAUCCACUUCAAUACA   84 Target Full Sequence	2.5	Sequence 1446 from Patent EP2074227	NA	coding protein	psRNATarget
HI403320.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   **||||*|||||||||=||||||| targets:61   UACACCCCAAUCCACUUCAAUACA   84 Target Full Sequence	2.5	Sequence 1445 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008667123.2	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   **=||||||||||||||||||*|| targets:2376   UGUACCUCAAUCCACUCCAAUCCA   2399 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008667124.2	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   **=||||||||||||||||||*|| targets:2398   UGUACCUCAAUCCACUCCAAUCCA   2421 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X4, mRNA	NA	coding protein	psRNATarget
AY111447.2	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   **||=||||||||||||||||*|* targets:351   UACAUCUCAAUCCACUCCAAUCCC   374 Target Full Sequence	2.5	Zea mays CL859_2 mRNA sequence	NA	coding protein	psRNATarget
BT067545.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   **||=||||||||||||||||*|* targets:1767   UACAUCUCAAUCCACUCCAAUCCC   1790 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0086J10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137799.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   **||=||||||||||||||||*|* targets:1948   UACAUCUCAAUCCACUCCAAUCCC   1971 Target Full Sequence	2.5	Zea mays putative protein kinase superfamily protein (LOC100192584), mRNA	NA	coding protein	psRNATarget
BT034601.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   **||=||||||||||||||||*|* targets:1948   UACAUCUCAAUCCACUCCAAUCCC   1971 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0002L05 mRNA, complete cds	NA	coding protein	psRNATarget
EZ106534.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   =**=|=|=|||||||||||||||* targets:114   GGGGCUUUAAUCCACUCCAAUACU   137 Target Full Sequence	3.0	TSA: Zea mays contig42192, mRNA sequence	NA	coding protein	psRNATarget
BT055357.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   =**=|=|=|||||||||||||||* targets:398   GGGGCUUUAAUCCACUCCAAUACU   421 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0070A22 mRNA, complete cds	NA	coding protein	psRNATarget
AY103783.2	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAUGU   1   =**=|=|=|||||||||||||||* targets:758   GGGGCUUUAAUCCACUCCAAUACU   781 Target Full Sequence	3.0	Zea mays PCO084580 mRNA sequence	NA	coding protein	psRNATarget