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BaseInfo

ncRNA ID novel_zma_miR4204
Species Zea mays
Class miRNA
Genome position Chr1:59291751-59291883 [-]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 1 - AAAGAUAUCUUUGCCGAGUGCCAA - 24
Stem-loop(if miRNA) --               AGC            CCGCA  UA  --AA            -AGU    G
  GGCACUCGGCAAAGA   CUUUGUCGAGUG     CU  GC    AGUCCUGCUCUC    AACG C
  |||||||||||||||   ||||||||||||     ||  ||    ||||||||||||    ||||
  CCGUGAGCCGUUUCU   GAAACGGUUCAC     GA  CG    UCAGGACGAGAG    UUGC A
AA               AUA            AUAAG  CA  GCUC            CUGU    A
Stem-loop sequence GGCACUCGGCAAAGAAGCCUUUGUCGAGUGCCGCACUUAGCAAAGUCCUGCUCUCAGUAACGGCAACGUUUGUCGAGAGCAGGACUCUCGGCACAGGAAUACACUUGGCAAAGAUAUCUUUGCCGAGUGCCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT066616.2
ncRNA:24   AACCGUGAGCCGUUUCUAUAGAAA   1
  ****||||=||||=||||||||||
targets:253   AGAUCACUUGGCAGAGAUAUCUUU   276

2.5 Zea mays full-length cDNA clone ZM_BFb0040K19 mRNA, complete cds NA coding protein psRNATarget
NM_001175881.1
ncRNA:24   AACCGUGAGCCGUUUCUAUAGAAA   1
  ****||||=||||=||||||||||
targets:253   AGAUCACUUGGCAGAGAUAUCUUU   276

2.5 Zea mays uncharacterized LOC100383219 (LOC100383219), mRNA NA coding protein psRNATarget