Search result

BaseInfo

ncRNA ID	novel_zma_miR4200
Species	Zea mays
Class	miRNA
Genome position	Chr1:179832986-179833071 [-]
Reference genome	RefGen_v4
Source	SRR2287160;SRR2287162;SRR2287163;SRR4237223
Length	22
Mature sequence(if miRNA)	1 - AAGAGAAGUGCACAGAUGAAGC - 22
Stem-loop(if miRNA)	--     G    UG              G  G          U   UUCAU UGUG  CUUCUCUUCUCUUA GU GGCUGCUAAG G   ||||| ||||  |||||||||||||| || ||||||||||   AAGUA ACAC  GAAGAGAAGAGAAU CA CCGAUGAUUC A CG     G    GU              A  G          U
Stem-loop sequence	UUCAUGUGUGUGCUUCUCUUCUCUUAGGUGGGCUGCUAAGUGAUCUUAGUAGCCGACAUAAGAGAAGAGAAGUGCACAGAUGAAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020538582.1	ncRNA:22   CGAAGUAGACACGUGAAGAGAA   1   ||||=||||||||=|||||||| targets:3270   GCUUUAUCUGUGCGCUUCUCUU   3291 Target Full Sequence	2.5	PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538581.1	ncRNA:22   CGAAGUAGACACGUGAAGAGAA   1   ||||=||||||||=|||||||| targets:3408   GCUUUAUCUGUGCGCUUCUCUU   3429 Target Full Sequence	2.5	PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020539254.1	ncRNA:22   CGAAGUAGACACGUGAAGAGAA   1   *||||*|||||||||||||||| targets:2395   UCUUCUUCUGUGCACUUCUCUU   2416 Target Full Sequence	1.0	PREDICTED: Zea mays protein ALP1-like (LOC109940154), mRNA	NA	coding protein	psRNATarget
XM_008657915.2	ncRNA:22   CGAAGUAGACACGUGAAGAGAA   1   *||||*||||||=||||||||| targets:1918   UCUUCUUCUGUGUACUUCUCUU   1939 Target Full Sequence	2.5	PREDICTED: Zea mays protein ALP1-like (LOC103635472), mRNA	NA	coding protein	psRNATarget