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BaseInfo

ncRNA ID novel_zma_miR4199
Species Zea mays
Class miRNA
Genome position Chr1:182273333-182273384 [-]
Reference genome RefGen_v4
Source SRR2287160
Length 24
Mature sequence(if miRNA) 1 - GUCCACGGUCCGGACUGUCCGCGG - 24
Stem-loop(if miRNA) --             -  C  A    G
  GCGGACGGUCUGG CC UG GGCC G
  ||||||||||||| || || ||||
  CGCCUGUCAGGCC GG AC CUGG A
GG             U  C  -    U
Stem-loop sequence GCGGACGGUCUGGCCCUGAGGCCGGAUGGUCCACGGUCCGGACUGUCCGCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ059430.1
ncRNA:24   GGCGCCUGUCAGGCCUGGCACCUG   1
  *|||||||*||||||||||*||||
targets:47   GCGCGGACCGUCCGGACCGCGGAC   70

2.5 TSA: Zea mays contig60552, mRNA sequence NA coding protein psRNATarget
EU940813.1
ncRNA:24   GGCGCCUGUCAGGCCUGGCACCUG   1
  *|||||||*||||||||||*||||
targets:60   GCGCGGACCGUCCGGACCGCGGAC   83

2.5 Zea mays clone 1145688 mRNA sequence NA coding protein psRNATarget