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BaseInfo

ncRNA ID novel_zma_miR4198
Species Zea mays
Class miRNA
Genome position Chr1:208989963-208990094 [-]
Reference genome RefGen_v4
Source SRR2287160
Length 24
Mature sequence(if miRNA) 109 - AGGACUGAUUUGGUGAUUAGAGAU - 132
Stem-loop(if miRNA) --   A               GA      G           A   UG -      C   C      A
  AGG CUGAUUUGGUGAUUA  GAUCUC AGGGGAUCCAU GGG  G AAUCCC UUG UAUUCA A
  ||| |||||||||||||||  |||||| ||||||||||| |||  | |||||| ||| ||||||
  UCC GACUAAACCACUAAU  CUAGGG UCUCCUAGGUA CCC  C UUAGGG AAC AUAAGU U
AG   C               AC      A           -   CU A      A   A      U
Stem-loop sequence AGGACUGAUUUGGUGAUUAGAGAUCUCGAGGGGAUCCAUAGGGUGGAAUCCCCUUGCUAUUCAAAUUUGAAUAACAAAGGGAUUACUCCCCAUGGAUCCUCUAGGGAUCCAUAAUCACCAAAUCAGCCCUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020552825.1
ncRNA:24   UAGAGAUUAGUGGUUUAGUCAGGA   1
  |||*||||||||||||||||||||
targets:4775   AUCCCUAAUCACCAAAUCAGUCCU   4798

0.0 PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008681392.2
ncRNA:24   UAGAGAUUAGUGGUUUAGUCAGGA   1
  |||*||||||||||||||||||||
targets:4684   AUCCCUAAUCACCAAAUCAGUCCU   4707

0.0 PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008681394.2
ncRNA:24   UAGAGAUUAGUGGUUUAGUCAGGA   1
  |||*||||||||||||||||||||
targets:4510   AUCCCUAAUCACCAAAUCAGUCCU   4533

0.0 PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X3, mRNA NA coding protein psRNATarget
EU945757.1
ncRNA:24   UAGAGAUUAGUGGUUUAGUCAGGA   1
  *|=|||==||||||||||||||||
targets:69   UUUUCUGGUCACCAAAUCAGUCCU   92

2.0 Zea mays clone 284734 mRNA sequence NA coding protein psRNATarget
AY108273.1
ncRNA:24   UAGAGAUUAGUGGUUUAGUCAGGA   1
  |||*|||*||||||||||||||||
targets:454   AUCCCUAUUCACCAAAUCAGUCCU   477

1.0 Zea mays PCO108913 mRNA sequence NA coding protein psRNATarget
XM_020545246.1
ncRNA:24   UAGAGAUUAGUGGUUUAGUCAGGA   1
  |||*||||||||||||||||*||*
targets:152   AUCCCUAAUCACCAAAUCAGCCCG   175

2.5 PREDICTED: Zea mays methyl binding domain113 (cl26423_1), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020538171.1
ncRNA:24   UAGAGAUUAGUGGUUUAGUCAGGA   1
  =||*||=|||||||||||||*|||
targets:1   GUCCCUGAUCACCAAAUCAGACCU   24

2.5 PREDICTED: Zea mays uncharacterized LOC109939824 (LOC109939824), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001196706.1
ncRNA:24   UAGAGAUUAGUGGUUUAGUCAGGA   1
  |||*|*==||||||||||||||||
targets:866   AUCCCCGGUCACCAAAUCAGUCCU   889

3.0 Zea mays hypothetical protein (LOC100502229), mRNA NA coding protein psRNATarget
BT087480.1
ncRNA:24   UAGAGAUUAGUGGUUUAGUCAGGA   1
  |||*|*==||||||||||||||||
targets:866   AUCCCCGGUCACCAAAUCAGUCCU   889

3.0 Zea mays full-length cDNA clone ZM_BFb0089I03 mRNA, complete cds NA coding protein psRNATarget
EZ056613.1
ncRNA:24   UAGAGAUUAGUGGUUUAGUCAGGA   1
  |||*|*==||||||||||||||||
targets:159   AUCCCCGGUCACCAAAUCAGUCCU   182

3.0 TSA: Zea mays contig57735, mRNA sequence NA coding protein psRNATarget
NM_001175907.1
ncRNA:24   UAGAGAUUAGUGGUUUAGUCAGGA   1
  |||*||||*|||||||||||*|||
targets:1339   AUCCCUAACCACCAAAUCAGCCCU   1362

2.5 Zea mays CCAAT-HAP2 transcription factor (CA2P12), mRNA NA coding protein psRNATarget
BT066676.1
ncRNA:24   UAGAGAUUAGUGGUUUAGUCAGGA   1
  |||*||||*|||||||||||*|||
targets:1339   AUCCCUAACCACCAAAUCAGCCCU   1362

2.5 Zea mays full-length cDNA clone ZM_BFb0044C22 mRNA, complete cds NA coding protein psRNATarget
NM_001346674.1
ncRNA:24   UA-GAGAUUAGUGGUUUAGUCAGGA   1
  ||-|*=||||||||||||||*||||
targets:339   AUACCUUAAUCACCAAAUCAAUCCU   363

1.5 Zea mays uncharacterized LOC103650254 (LOC103650254), mRNA NA coding protein psRNATarget
NM_001328562.1
ncRNA:24   UA-GAGAUUAGUGGUUUAGUCAGGA   1
  ||-|*=||||||||||||||*||||
targets:336   AUACCUUAAUCACCAAAUCAAUCCU   360

1.5 Zea mays uncharacterized LOC103650254 (LOC103650254), mRNA NA coding protein psRNATarget
BT035791.1
ncRNA:24   UAGAGAUUAGUGGUUUAGUCAGGA   1
  |*||**|||||||||||||||||*
targets:747   ACCUGGAAUCACCAAAUCAGUCCC   770

2.0 Zea mays full-length cDNA clone ZM_BFb0083I04 mRNA, complete cds NA coding protein psRNATarget
NM_001138628.1
ncRNA:24   UAGAGAUUAGUGGUUUAGUCAGGA   1
  |*||**|||||||||||||||||*
targets:747   ACCUGGAAUCACCAAAUCAGUCCC   770

2.0 Zea mays uncharacterized LOC100193516 (LOC100193516), mRNA NA coding protein psRNATarget
XM_020549481.1
ncRNA:24   UAGAGAUUAGUGGUUUAGUCAGGA   1
  |*||**|||||||||||||||||*
targets:374   ACCUGGAAUCACCAAAUCAGUCCC   397

2.0 PREDICTED: Zea mays uncharacterized LOC100193516 (LOC100193516), transcript variant X1, mRNA NA coding protein psRNATarget