Search result

BaseInfo

ncRNA ID novel_zma_miR4196
Species Zea mays
Class miRNA
Genome position Chr1:209023121-209023197 [-]
Reference genome RefGen_v4
Source SRR2287160;SRR2287161;SRR2287164;SRR2287165;SRR4237222;SRR4237226;SRR4237227;SRR5105959
Length 21
Mature sequence(if miRNA) 57 - AUCACGUGAGGAUUGGAGGGG - 77
Stem-loop(if miRNA) --      U AG           A             UA
  AUCACG G  GAUUGGAGGGG UUGAGGGGGAAAU  G
  |||||| |  ||||||||||| |||||||||||||
  UAGUGC C  CUAACCUCCCC AACUCUCCCUUUA  U
CC      U CU           -             UU
Stem-loop sequence AUCACGUGAGGAUUGGAGGGGAUUGAGGGGGAAAUUAGUUUAUUUCCCUCUCAACCCCUCCAAUCUCCUCGUGAUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235623.1
ncRNA:21   GGGGAGGUUAGGAGUGCACUA   1
  ||||||||||||||*||||||
targets:43   CCCCUCCAAUCCUCCCGUGAU   63

1.5 Sequence 1618 from Patent EP2985353 NA coding protein psRNATarget
JB163954.1
ncRNA:21   GGGGAGGUUAGGAGUGCACUA   1
  ||||||||||||||*||||||
targets:43   CCCCUCCAAUCCUCCCGUGAU   63

1.5 Sequence 1618 from Patent EP2559767 NA coding protein psRNATarget
HI403493.1
ncRNA:21   GGGGAGGUUAGGAGUGCACUA   1
  ||||||||||||||*||||||
targets:43   CCCCUCCAAUCCUCCCGUGAU   63

1.5 Sequence 1618 from Patent EP2074227 NA coding protein psRNATarget