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BaseInfo

ncRNA ID	novel_zma_miR4194
Species	Zea mays
Class	miRNA
Genome position	Chr1:216285157-216285281 [-]
Reference genome	RefGen_v4
Source	SRR2287160
Length	24
Mature sequence(if miRNA)	102 - AGGGCUUGUUCGGUUAGAAGUGGA - 125
Stem-loop(if miRNA)	--   G           AG         GAA     UUA              AUUUG   G   A   AGG CUUGUUCGGUU  AAGUGGAUC   AGAGA   GAGGGGAUUAAAUU     CUA UCA A   ||| |||||||||||  |||||||||   |||||   ||||||||||||||     ||| |||   UCC GAACAAGCCAA  UUCACUUAG   UCUCU   CUCUCCUAAUUUAG     GGU AGU A AA   G           CG         ---     ---              GGAAA   -   U
Stem-loop sequence	AGGGCUUGUUCGGUUAGAAGUGGAUCGAAAGAGAUUAGAGGGGAUUAAAUUAUUUGCUAGUCAAAAUUGAUGGAAAGGGAUUUAAUCCUCUCUCUCUGAUUCACUUGCAACCGAACAAGGCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT054119.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||||||||||||||||||||||| targets:463   UCCACUUCUAACCGAACAAGCCCU   486 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0117A22 mRNA, complete cds	NA	coding protein	psRNATarget
BT069589.2	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   ||||=|*||||||||||||||||| targets:1043   UCCAUUACUAACCGAACAAGCCCU   1066 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds	NA	coding protein	psRNATarget
EZ107077.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||||**||||||||||||||||| targets:143   UCCACACCUAACCGAACAAGCCCU   166 Target Full Sequence	2.0	TSA: Zea mays contig42735, mRNA sequence	NA	coding protein	psRNATarget
EU942133.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||||**||||||||||||||||| targets:213   UCCACACCUAACCGAACAAGCCCU   236 Target Full Sequence	2.0	Zea mays clone 1476690 mRNA sequence	NA	coding protein	psRNATarget
EU941788.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||||**||||||||||||||||| targets:203   UCCACACCUAACCGAACAAGCCCU   226 Target Full Sequence	2.0	Zea mays clone 1470119 mRNA sequence	NA	coding protein	psRNATarget
BT055357.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||||**||||||||||||||||| targets:428   UCCACGCCUAACCGAACAAGCCCU   451 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0070A22 mRNA, complete cds	NA	coding protein	psRNATarget
AY103783.2	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||||**||||||||||||||||| targets:788   UCCACGCCUAACCGAACAAGCCCU   811 Target Full Sequence	2.0	Zea mays PCO084580 mRNA sequence	NA	coding protein	psRNATarget
EU973020.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   ||=|*||=||||||||||||=||| targets:1187   UCUAGUUUUAACCGAACAAGUCCU   1210 Target Full Sequence	2.5	Zea mays clone 391815 6-phosphogluconolactonase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158484.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   ||=|*||=||||||||||||=||| targets:1187   UCUAGUUUUAACCGAACAAGUCCU   1210 Target Full Sequence	2.5	Zea mays 6-phosphogluconolactonase (LOC100285593), mRNA	NA	coding protein	psRNATarget
BT055781.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*|||*|||||||||||||||| targets:1634   UCCCCUUGUAACCGAACAAGCCCU   1657 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0185O06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153140.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*|||*|||||||||||||||| targets:1634   UCCCCUUGUAACCGAACAAGCCCU   1657 Target Full Sequence	1.0	Zea mays uncharacterized LOC100280209 (LOC100280209), mRNA	NA	coding protein	psRNATarget
BT061569.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*|||*|||||||||||||||| targets:1823   UCCCCUUGUAACCGAACAAGCCCU   1846 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0159M03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||||**||||||||||||||||| targets:3293   UCCACCCCUAACCGAACAAGCCCU   3316 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
EU965297.1	ncRNA:24   AGGU---GAAGAUUGGCUUGUUCGGGA   1   ||||---|||*||||||||||||=||| targets:1165   UCCAUACCUUGUAACCGAACAAGUCCU   1191 Target Full Sequence	2.5	Zea mays clone 285080 PRKR interacting protein 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156517.1	ncRNA:24   AGGU---GAAGAUUGGCUUGUUCGGGA   1   ||||---|||*||||||||||||=||| targets:1165   UCCAUACCUUGUAACCGAACAAGUCCU   1191 Target Full Sequence	2.5	Zea mays PRKR interacting protein 1 (cl40218_1), mRNA	NA	coding protein	psRNATarget
XM_020550140.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   ||||=**||||||||||||||||| targets:3606   UCCAUCCCUAACCGAACAAGCCCU   3629 Target Full Sequence	2.0	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675573.2	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   ||||=**||||||||||||||||| targets:3606   UCCAUCCCUAACCGAACAAGCCCU   3629 Target Full Sequence	2.0	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU968162.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   *||*||||*||||||||||||||| targets:250   ACCCCUUCAAACCGAACAAGCCCU   273 Target Full Sequence	1.0	Zea mays clone 315798 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT054737.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   *||*||||*||||||||||||||| targets:211   ACCCCUUCAAACCGAACAAGCCCU   234 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661692.2	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*||*||||||*|||||||||| targets:2272   UCCCCUCCUAACCAAACAAGCCCU   2295 Target Full Sequence	2.5	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X18, mRNA	NA	coding protein	psRNATarget
XM_008661691.2	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*||*||||||*|||||||||| targets:2272   UCCCCUCCUAACCAAACAAGCCCU   2295 Target Full Sequence	2.5	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X17, mRNA	NA	coding protein	psRNATarget
XM_008661689.2	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*||*||||||*|||||||||| targets:2272   UCCCCUCCUAACCAAACAAGCCCU   2295 Target Full Sequence	2.5	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020544136.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*||*||||||*|||||||||| targets:2272   UCCCCUCCUAACCAAACAAGCCCU   2295 Target Full Sequence	2.5	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_020544139.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*||*||||||*|||||||||| targets:2272   UCCCCUCCUAACCAAACAAGCCCU   2295 Target Full Sequence	2.5	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X16, mRNA	NA	coding protein	psRNATarget
XM_020544133.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*||*||||||*|||||||||| targets:2272   UCCCCUCCUAACCAAACAAGCCCU   2295 Target Full Sequence	2.5	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020544131.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*||*||||||*|||||||||| targets:2272   UCCCCUCCUAACCAAACAAGCCCU   2295 Target Full Sequence	2.5	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020544137.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*||*||||||*|||||||||| targets:2272   UCCCCUCCUAACCAAACAAGCCCU   2295 Target Full Sequence	2.5	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020544135.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*||*||||||*|||||||||| targets:2272   UCCCCUCCUAACCAAACAAGCCCU   2295 Target Full Sequence	2.5	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020544134.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*||*||||||*|||||||||| targets:2272   UCCCCUCCUAACCAAACAAGCCCU   2295 Target Full Sequence	2.5	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020544132.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*||*||||||*|||||||||| targets:2272   UCCCCUCCUAACCAAACAAGCCCU   2295 Target Full Sequence	2.5	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020544126.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*||*||||||*|||||||||| targets:2272   UCCCCUCCUAACCAAACAAGCCCU   2295 Target Full Sequence	2.5	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544125.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*||*||||||*|||||||||| targets:2272   UCCCCUCCUAACCAAACAAGCCCU   2295 Target Full Sequence	2.5	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544130.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*||*||||||*|||||||||| targets:2272   UCCCCUCCUAACCAAACAAGCCCU   2295 Target Full Sequence	2.5	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020544127.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*||*||||||*|||||||||| targets:2272   UCCCCUCCUAACCAAACAAGCCCU   2295 Target Full Sequence	2.5	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020544129.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||*||*||||||*|||||||||| targets:2272   UCCCCUCCUAACCAAACAAGCCCU   2295 Target Full Sequence	2.5	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X5, mRNA	NA	coding protein	psRNATarget
JB163391.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||-|||*||||||||||||*||| targets:6   UCC-CUUGUAACCGAACAAGGCCU   28 Target Full Sequence	2.5	Sequence 1055 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235060.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||-|||*||||||||||||*||| targets:6   UCC-CUUGUAACCGAACAAGGCCU   28 Target Full Sequence	2.5	Sequence 1055 from Patent EP2985353	NA	coding protein	psRNATarget
HI402930.1	ncRNA:24   AGGUGAAGAUUGGCUUGUUCGGGA   1   |||-|||*||||||||||||*||| targets:6   UCC-CUUGUAACCGAACAAGGCCU   28 Target Full Sequence	2.5	Sequence 1055 from Patent EP2074227	NA	coding protein	psRNATarget