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BaseInfo

ncRNA ID novel_zma_miR4192
Species Zea mays
Class miRNA
Genome position Chr1:219165491-219165571 [-]
Reference genome RefGen_v4
Source SRR2287160;SRR2287161;SRR2089707
Length 24
Mature sequence(if miRNA) 58 - GUUCGGUUAGGAGUGGAUUGAGGG - 81
Stem-loop(if miRNA) --        AG                   G    A   
  GUUCGGUU  GAGUGGAUUGAGGGGGAAU GAGG GAUU
  ||||||||  ||||||||||||||||||| |||| |||A
  CAAGCUAA  UUCACCUAACUCCCCUUUA CUCC CUAA
AA        AU                   A    C   
Stem-loop sequence GUUCGGUUAGGAGUGGAUUGAGGGGGAAUGGAGGAGAUUAAAUCCCCUCAAUUUCCCCUCAAUCCACUUUAAAUCGAACAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008674377.2
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||=||||||=||||||||=|||||
targets:3097   CCUUCAAUCUACUCCUAAUCGAAC   3120

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||=||||||=||||||||=|||||
targets:3110   CCUUCAAUCUACUCCUAAUCGAAC   3133

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674375.2
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||=||||||=||||||||=|||||
targets:3141   CCUUCAAUCUACUCCUAAUCGAAC   3164

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020552749.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||||||||||||*|||||||||||
targets:3286   CCCUCAAUCCACCCCUAACCGAAC   3309

1.5 PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA NA coding protein psRNATarget
BT054119.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  |==||=|||||||=||||||||||
targets:456   CUUUCGAUCCACUUCUAACCGAAC   479

2.5 Zea mays full-length cDNA clone ZM_BFb0117A22 mRNA, complete cds NA coding protein psRNATarget
XM_008661613.2
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  |=||||||||||*|||||||||||
targets:3054   CUCUCAAUCCACCCCUAACCGAAC   3077

1.5 PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008661611.2
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  |=||||||||||*|||||||||||
targets:3059   CUCUCAAUCCACCCCUAACCGAAC   3082

1.5 PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X1, mRNA NA coding protein psRNATarget
EU942133.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  =|=|||||||||*|||||||||||
targets:206   UCUUCAAUCCACACCUAACCGAAC   229

1.5 Zea mays clone 1476690 mRNA sequence NA coding protein psRNATarget
EU941788.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  =|=|||||||||*|||||||||||
targets:196   UCUUCAAUCCACACCUAACCGAAC   219

1.5 Zea mays clone 1470119 mRNA sequence NA coding protein psRNATarget
BT017648.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  =|||||||||||*||||||||||=
targets:225   UCCUCAAUCCACCCCUAACCGAAU   248

2.5 Zea mays clone EL01N0439D04.c mRNA sequence NA coding protein psRNATarget
EZ107077.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ===|||||||||*|||||||||||
targets:136   UUUUCAAUCCACACCUAACCGAAC   159

1.5 TSA: Zea mays contig42735, mRNA sequence NA coding protein psRNATarget
BT055357.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ===|||||||||*|||||||||||
targets:421   UUUUCAAUCCACGCCUAACCGAAC   444

1.5 Zea mays full-length cDNA clone ZM_BFb0070A22 mRNA, complete cds NA coding protein psRNATarget
AY103783.2
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ===|||||||||*|||||||||||
targets:781   UUUUCAAUCCACGCCUAACCGAAC   804

1.5 Zea mays PCO084580 mRNA sequence NA coding protein psRNATarget
XM_008661692.2
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||||||||||*|||||||||*|||
targets:2265   CCCUCAAUCCCCUCCUAACCAAAC   2288

2.5 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X18, mRNA NA coding protein psRNATarget
XM_008661691.2
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||||||||||*|||||||||*|||
targets:2265   CCCUCAAUCCCCUCCUAACCAAAC   2288

2.5 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X17, mRNA NA coding protein psRNATarget
XM_008661689.2
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||||||||||*|||||||||*|||
targets:2265   CCCUCAAUCCCCUCCUAACCAAAC   2288

2.5 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020544136.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||||||||||*|||||||||*|||
targets:2265   CCCUCAAUCCCCUCCUAACCAAAC   2288

2.5 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X13, mRNA NA coding protein psRNATarget
XM_020544139.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||||||||||*|||||||||*|||
targets:2265   CCCUCAAUCCCCUCCUAACCAAAC   2288

2.5 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X16, mRNA NA coding protein psRNATarget
XM_020544133.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||||||||||*|||||||||*|||
targets:2265   CCCUCAAUCCCCUCCUAACCAAAC   2288

2.5 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020544131.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||||||||||*|||||||||*|||
targets:2265   CCCUCAAUCCCCUCCUAACCAAAC   2288

2.5 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020544137.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||||||||||*|||||||||*|||
targets:2265   CCCUCAAUCCCCUCCUAACCAAAC   2288

2.5 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X14, mRNA NA coding protein psRNATarget
XM_020544135.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||||||||||*|||||||||*|||
targets:2265   CCCUCAAUCCCCUCCUAACCAAAC   2288

2.5 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020544134.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||||||||||*|||||||||*|||
targets:2265   CCCUCAAUCCCCUCCUAACCAAAC   2288

2.5 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X11, mRNA NA coding protein psRNATarget
XM_020544132.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||||||||||*|||||||||*|||
targets:2265   CCCUCAAUCCCCUCCUAACCAAAC   2288

2.5 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020544126.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||||||||||*|||||||||*|||
targets:2265   CCCUCAAUCCCCUCCUAACCAAAC   2288

2.5 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020544125.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||||||||||*|||||||||*|||
targets:2265   CCCUCAAUCCCCUCCUAACCAAAC   2288

2.5 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020544130.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||||||||||*|||||||||*|||
targets:2265   CCCUCAAUCCCCUCCUAACCAAAC   2288

2.5 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020544127.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||||||||||*|||||||||*|||
targets:2265   CCCUCAAUCCCCUCCUAACCAAAC   2288

2.5 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020544129.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  ||||||||||*|||||||||*|||
targets:2265   CCCUCAAUCCCCUCCUAACCAAAC   2288

2.5 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X5, mRNA NA coding protein psRNATarget
EU947467.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  =|=|||||||*||||||||*||||
targets:1303   UCUUCAAUCCCCUCCUAACAGAAC   1326

2.5 Zea mays clone 343885 mRNA sequence NA coding protein psRNATarget
NM_001323405.1
ncRNA:24   GGGAGUUAGGUGAGGAUUGGCUUG   1
  =|=|||||||*||||||||*||||
targets:2006   UCUUCAAUCCCCUCCUAACAGAAC   2029

2.5 Zea mays SKP1-interacting partner 15-like (LOC103648491), transcript variant 1, mRNA NA coding protein psRNATarget
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