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BaseInfo

ncRNA ID novel_zma_miR4191
Species Zea mays
Class miRNA
Genome position Chr1:244290496-244290592 [-]
Reference genome RefGen_v4
Source SRR2287160
Length 24
Mature sequence(if miRNA) 1 - AUACAUGUGGAUUGAGGUCAAUAC - 24
Stem-loop(if miRNA) --   U          C          U  U             A   
  AUU ACCUCAAUUC CAUGUGUUGA GU GAUUGGGGUGUAA UUAG
  ||| |||||||||| |||||||||| || ||||||||||||| |||U
  UAA UGGAGUUAGG GUACAUAACU CA CUAAUCUCACAUU AAUU
CA   C          U          C  C             G   
Stem-loop sequence AUUUACCUCAAUUCCCAUGUGUUGAUGUUGAUUGGGGUGUAAAUUAGUUUAAGUUACACUCUAAUCCACCUCAAUACAUGUGGAUUGAGGUCAAUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235147.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||||
targets:4   GUAUUGACCUCAAUCCACAUGUAU   27

0.0 Sequence 1142 from Patent EP2985353 NA coding protein psRNATarget
JB163478.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||||
targets:4   GUAUUGACCUCAAUCCACAUGUAU   27

0.0 Sequence 1142 from Patent EP2559767 NA coding protein psRNATarget
HI403017.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||||
targets:4   GUAUUGACCUCAAUCCACAUGUAU   27

0.0 Sequence 1142 from Patent EP2074227 NA coding protein psRNATarget
XM_020543503.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:1814   GUAUUGACCUCAAUCCACAUGUGU   1837

1.5 PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020543504.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:1813   GUAUUGACCUCAAUCCACAUGUGU   1836

1.5 PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X2, mRNA NA coding protein psRNATarget
HI403376.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:5   GUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1501 from Patent EP2074227 NA coding protein psRNATarget
HI403319.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:5   GUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1444 from Patent EP2074227 NA coding protein psRNATarget
JB163781.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:5   GUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1445 from Patent EP2559767 NA coding protein psRNATarget
LQ235449.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:5   GUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1444 from Patent EP2985353 NA coding protein psRNATarget
JB163690.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:5   GUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1354 from Patent EP2559767 NA coding protein psRNATarget
LQ235451.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:5   GUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1446 from Patent EP2985353 NA coding protein psRNATarget
HI403321.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:5   GUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1446 from Patent EP2074227 NA coding protein psRNATarget
LQ235359.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:5   GUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1354 from Patent EP2985353 NA coding protein psRNATarget
HI403229.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:5   GUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1354 from Patent EP2074227 NA coding protein psRNATarget
JB163782.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:5   GUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1446 from Patent EP2559767 NA coding protein psRNATarget
JB163780.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:5   GUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1444 from Patent EP2559767 NA coding protein psRNATarget
LQ235506.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:5   GUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1501 from Patent EP2985353 NA coding protein psRNATarget
LQ235450.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:5   GUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1445 from Patent EP2985353 NA coding protein psRNATarget
JB163837.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:5   GUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1501 from Patent EP2559767 NA coding protein psRNATarget
HI403320.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:5   GUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1445 from Patent EP2074227 NA coding protein psRNATarget
LQ235205.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:4   GUAUUGACCUCAAUCCACAUGUGU   27

1.5 Sequence 1200 from Patent EP2985353 NA coding protein psRNATarget
JB163536.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:4   GUAUUGACCUCAAUCCACAUGUGU   27

1.5 Sequence 1200 from Patent EP2559767 NA coding protein psRNATarget
HI403075.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||||||=|
targets:4   GUAUUGACCUCAAUCCACAUGUGU   27

1.5 Sequence 1200 from Patent EP2074227 NA coding protein psRNATarget
JB163427.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||||=|||||||=||||||||
targets:4   GUAUUGAUCUCAAUCUACAUGUAU   27

2.5 Sequence 1091 from Patent EP2559767 NA coding protein psRNATarget
HI402966.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||||=|||||||=||||||||
targets:4   GUAUUGAUCUCAAUCUACAUGUAU   27

2.5 Sequence 1091 from Patent EP2074227 NA coding protein psRNATarget
LQ235096.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||||=|||||||=||||||||
targets:4   GUAUUGAUCUCAAUCUACAUGUAU   27

2.5 Sequence 1091 from Patent EP2985353 NA coding protein psRNATarget
LQ235393.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  *|||||||||||||||||||||=|
targets:5   AUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1388 from Patent EP2985353 NA coding protein psRNATarget
HI403263.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  *|||||||||||||||||||||=|
targets:5   AUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1388 from Patent EP2074227 NA coding protein psRNATarget
JB163724.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  *|||||||||||||||||||||=|
targets:5   AUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1388 from Patent EP2559767 NA coding protein psRNATarget
HI403262.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  *|||||||||||||||||||||=|
targets:5   AUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1387 from Patent EP2074227 NA coding protein psRNATarget
LQ235392.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  *|||||||||||||||||||||=|
targets:5   AUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1387 from Patent EP2985353 NA coding protein psRNATarget
JB163723.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  *|||||||||||||||||||||=|
targets:5   AUAUUGACCUCAAUCCACAUGUGU   28

1.5 Sequence 1387 from Patent EP2559767 NA coding protein psRNATarget
HI407245.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||*|||||
targets:19   GUAUUGACCUCAAUCCACUUGUAU   42

1.5 Sequence 5370 from Patent EP2074227 NA coding protein psRNATarget
JB167706.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||*|||||
targets:19   GUAUUGACCUCAAUCCACUUGUAU   42

1.5 Sequence 5370 from Patent EP2559767 NA coding protein psRNATarget
LQ239375.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||||||||||||||||||*|||||
targets:19   GUAUUGACCUCAAUCCACUUGUAU   42

1.5 Sequence 5370 from Patent EP2985353 NA coding protein psRNATarget
LQ235080.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |*||||||||||||||||||||||
targets:4   GCAUUGACCUCAAUCCACAUGUAU   27

0.0 Sequence 1075 from Patent EP2985353 NA coding protein psRNATarget
JB163411.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |*||||||||||||||||||||||
targets:4   GCAUUGACCUCAAUCCACAUGUAU   27

0.0 Sequence 1075 from Patent EP2559767 NA coding protein psRNATarget
HI402950.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |*||||||||||||||||||||||
targets:4   GCAUUGACCUCAAUCCACAUGUAU   27

0.0 Sequence 1075 from Patent EP2074227 NA coding protein psRNATarget
LQ235126.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*||||||||||||||||||
targets:4   GUAUUCACCUCAAUCCACAUGUAU   27

1.0 Sequence 1121 from Patent EP2985353 NA coding protein psRNATarget
HI402996.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*||||||||||||||||||
targets:4   GUAUUCACCUCAAUCCACAUGUAU   27

1.0 Sequence 1121 from Patent EP2074227 NA coding protein psRNATarget
JB163457.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*||||||||||||||||||
targets:4   GUAUUCACCUCAAUCCACAUGUAU   27

1.0 Sequence 1121 from Patent EP2559767 NA coding protein psRNATarget
XM_020540612.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*||||||||=|||||||||
targets:1706   GUAUUAACCUCAAUUCACAUGUAU   1729

2.5 PREDICTED: Zea mays membrane protein (LOC100381468), transcript variant X1, mRNA NA coding protein psRNATarget
EU963259.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*||||||||=|||||||||
targets:857   GUAUUAACCUCAAUUCACAUGUAU   880

2.5 Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds NA coding protein psRNATarget
BT019068.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||||*|||||||=||||||||
targets:167   GUAUUGAGCUCAAUCUACAUGUAU   190

2.5 Zea mays clone Contig631.F mRNA sequence NA coding protein psRNATarget
EU955100.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*||||||||=|||||||||
targets:637   GUAUUAACCUCAAUUCACAUGUAU   660

2.5 Zea mays clone 1509994 membrane protein mRNA, complete cds NA coding protein psRNATarget
NM_001326691.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*||||||||=|||||||||
targets:637   GUAUUAACCUCAAUUCACAUGUAU   660

2.5 Zea mays membrane protein (LOC100381468), mRNA NA coding protein psRNATarget
JB163822.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*||||||||||||||||=|
targets:5   GUAUUAACCUCAAUCCACAUGUGU   28

2.5 Sequence 1486 from Patent EP2559767 NA coding protein psRNATarget
HI403361.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*||||||||||||||||=|
targets:5   GUAUUAACCUCAAUCCACAUGUGU   28

2.5 Sequence 1486 from Patent EP2074227 NA coding protein psRNATarget
LQ235491.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*||||||||||||||||=|
targets:5   GUAUUAACCUCAAUCCACAUGUGU   28

2.5 Sequence 1486 from Patent EP2985353 NA coding protein psRNATarget
HI403486.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||||||*=|||||||||||||
targets:1   GUAUUGACCCUAAUCCACAUGUAU   24

2.0 Sequence 1611 from Patent EP2074227 NA coding protein psRNATarget
LQ235616.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||||||*=|||||||||||||
targets:1   GUAUUGACCCUAAUCCACAUGUAU   24

2.0 Sequence 1611 from Patent EP2985353 NA coding protein psRNATarget
JB163947.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||||||*=|||||||||||||
targets:1   GUAUUGACCCUAAUCCACAUGUAU   24

2.0 Sequence 1611 from Patent EP2559767 NA coding protein psRNATarget
JB163470.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  *||||*||||||||||||||||||
targets:4   AUAUUCACCUCAAUCCACAUGUAU   27

1.0 Sequence 1134 from Patent EP2559767 NA coding protein psRNATarget
LQ235139.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  *||||*||||||||||||||||||
targets:4   AUAUUCACCUCAAUCCACAUGUAU   27

1.0 Sequence 1134 from Patent EP2985353 NA coding protein psRNATarget
HI403009.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  *||||*||||||||||||||||||
targets:4   AUAUUCACCUCAAUCCACAUGUAU   27

1.0 Sequence 1134 from Patent EP2074227 NA coding protein psRNATarget
XM_020546288.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*||=|=|||||||||||||
targets:3025   GUAUUCACUUUAAUCCACAUGUAU   3048

3.0 PREDICTED: Zea mays FAD/NAD(P)-binding oxidoreductase family protein (LOC100126935), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008656789.2
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*||=|=|||||||||||||
targets:2671   GUAUUCACUUUAAUCCACAUGUAU   2694

3.0 PREDICTED: Zea mays FAD/NAD(P)-binding oxidoreductase family protein (LOC100126935), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008656799.2
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*||=|=|||||||||||||
targets:2634   GUAUUCACUUUAAUCCACAUGUAU   2657

3.0 PREDICTED: Zea mays FAD/NAD(P)-binding oxidoreductase family protein (LOC100126935), transcript variant X2, mRNA NA coding protein psRNATarget
AF277454.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||*||||=|||||||||=||||||
targets:1623   GUUUUGAUCUCAAUCCAUAUGUAU   1646

2.5 Zea mays UMP synthase (UMPS) mRNA, UMPS-1 allele, complete cds NA coding protein psRNATarget
NM_001112411.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  ||*||||=|||||||||=||||||
targets:1623   GUUUUGAUCUCAAUCCAUAUGUAU   1646

2.5 Zea mays uncharacterized LOC732794 (IDP506), mRNA NA coding protein psRNATarget
EZ063549.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||||||**|||||||||||||
targets:91   GUAUUGACCAAAAUCCACAUGUAU   114

2.0 TSA: Zea mays contig64671, mRNA sequence NA coding protein psRNATarget
HI402937.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |*||*|||||||||||||||||||
targets:4   GCAUAGACCUCAAUCCACAUGUAU   27

0.0 Sequence 1062 from Patent EP2074227 NA coding protein psRNATarget
LQ235067.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |*||*|||||||||||||||||||
targets:4   GCAUAGACCUCAAUCCACAUGUAU   27

0.0 Sequence 1062 from Patent EP2985353 NA coding protein psRNATarget
JB163398.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |*||*|||||||||||||||||||
targets:4   GCAUAGACCUCAAUCCACAUGUAU   27

0.0 Sequence 1062 from Patent EP2559767 NA coding protein psRNATarget
HI403066.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*|||*=|||||||||||||
targets:4   GUAUUCACCCUAAUCCACAUGUAU   27

3.0 Sequence 1191 from Patent EP2074227 NA coding protein psRNATarget
JB163527.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*|||*=|||||||||||||
targets:4   GUAUUCACCCUAAUCCACAUGUAU   27

3.0 Sequence 1191 from Patent EP2559767 NA coding protein psRNATarget
LQ235196.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*|||*=|||||||||||||
targets:4   GUAUUCACCCUAAUCCACAUGUAU   27

3.0 Sequence 1191 from Patent EP2985353 NA coding protein psRNATarget
JB163512.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  *|||*||=|*||||||||||||||
targets:4   CUAUAGAUCCCAAUCCACAUGUAU   27

2.0 Sequence 1176 from Patent EP2559767 NA coding protein psRNATarget
HI403051.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  *|||*||=|*||||||||||||||
targets:4   CUAUAGAUCCCAAUCCACAUGUAU   27

2.0 Sequence 1176 from Patent EP2074227 NA coding protein psRNATarget
LQ235181.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  *|||*||=|*||||||||||||||
targets:4   CUAUAGAUCCCAAUCCACAUGUAU   27

2.0 Sequence 1176 from Patent EP2985353 NA coding protein psRNATarget
HI403123.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*|||**|||||||||||||
targets:4   GUAUUCACCAGAAUCCACAUGUAU   27

3.0 Sequence 1248 from Patent EP2074227 NA coding protein psRNATarget
JB163584.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*|||**|||||||||||||
targets:4   GUAUUCACCAGAAUCCACAUGUAU   27

3.0 Sequence 1248 from Patent EP2559767 NA coding protein psRNATarget
LQ235253.1
ncRNA:24   CAUAACUGGAGUUAGGUGUACAUA   1
  |||||*|||**|||||||||||||
targets:4   GUAUUCACCAGAAUCCACAUGUAU   27

3.0 Sequence 1248 from Patent EP2985353 NA coding protein psRNATarget