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BaseInfo

ncRNA ID	novel_zma_miR4185
Species	Zea mays
Class	miRNA
Genome position	Chr1:282400299-282400513 [+]
Reference genome	RefGen_v4
Source	SRR2287160
Length	24
Mature sequence(if miRNA)	192 - GAGGAAUGAGGUAGUGAUGGAUCA - 215
Stem-loop(if miRNA)	--         C  UC          A   UAA  A      A    A A        GC      C             ----AAUCACCUCA   CGCGUCACUUCAU   AUUCAUCAU AU  CAUUCCUUAU GUA   UA UUAGUA UAAU U AGGAGUGG  UCAUUC ACUAAAUUUGUGG              UGA             U   ||||||||| ||  |||||||||| |||   || |||||| |||| | ||||||||  |||||| |||||||||||||              |||   UAGGUAGUG UG  GUAAGGAGUA UAU   AU AAUUAU AUUA A UCCUUAUC  AGUAGG UGAUUUAAAUACU              UCU             U AC         A  GA          C   -CA  C      A    A C        UU      A             CCACAAACCAAACU   UAGUUAGAUAAGA
Stem-loop sequence	AUUCAUCAUCAUUCCAUUCCUUAUAGUAUAAUAAUUAGUAAUAAUAUAAGGAGUGGGCUCAUUCCACUAAAUUUGUGGAAUCACCUCAUGACGCGUCACUUCAUUUAGAAUAGAUUGAUUCUUCAAACCAAACACCUCAUAAAUUUAGUAGGAUGAUUCUAUUCCUCAAAUUAAUAUUAACUAACUAUCAUGAGGAAUGAGGUAGUGAUGGAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068564.1	ncRNA:24   ACUAGGUAGUGAUGGAGUAAGGAG   1   |||||||||||*|||||||||||= targets:129   UGAUCCAUCACCACCUCAUUCCUU   152 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0327N20 mRNA, complete cds	NA	coding protein	psRNATarget
BT063621.1	ncRNA:24   ACUAGGUAGUGAUGGAGUAAGGAG   1   ||||||||||=*|||||||||||| targets:932   UGAUCCAUCAUCACCUCAUUCCUC   955 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0086K20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174998.1	ncRNA:24   ACUAGGUAGUGAUGGAGUAAGGAG   1   ||||||||||=*|||||||||||| targets:932   UGAUCCAUCAUCACCUCAUUCCUC   955 Target Full Sequence	2.5	Zea mays soluble epoxide hydrolase (pco095801), transcript variant 3, mRNA	NA	coding protein	psRNATarget
XM_020546133.1	ncRNA:24   ACUAGGUAGUGAUGGAGUAAGGAG   1   ||||=||||||*|||||||||||| targets:626   UGAUUCAUCACCACCUCAUUCCUC   649 Target Full Sequence	1.5	PREDICTED: Zea mays ubiquitin-activating enzyme E1 3 (LOC103634508), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU944542.1	ncRNA:24   ACUAGGUAGUGAUGGAGUAAGGAG   1   ||||*|=||||||||||=|||||| targets:1139   UGAUGCGUCACUACCUCGUUCCUC   1162 Target Full Sequence	2.5	Zea mays clone 222066 mRNA sequence	NA	coding protein	psRNATarget
NM_001143606.1	ncRNA:24   ACUAGGUAGUGAUGGAGUAAGGAG   1   ||||*||||||||*|||||||||= targets:413   UGAUACAUCACUAACUCAUUCCUU   436 Target Full Sequence	2.5	Zea mays 40S ribosomal protein S15a (pco072913), mRNA	NA	coding protein	psRNATarget
BT038207.1	ncRNA:24   ACUAGGUAGUGAUGGAGUAAGGAG   1   ||||*||||||||*|||||||||= targets:413   UGAUACAUCACUAACUCAUUCCUU   436 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0217H01 mRNA, complete cds	NA	coding protein	psRNATarget