Search result

BaseInfo

ncRNA ID	novel_zma_miR4181
Species	Zea mays
Class	miRNA
Genome position	Chr1:80122503-80122619 [-]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647385;SRR2647387;SRR2647467
Length	24
Mature sequence(if miRNA)	94 - GAAGCCGCCGAAAAUAGUACUACU - 117
Stem-loop(if miRNA)	-             A  GUACUACUUUUGGCGGCUUUGUCAGCGGCCGCCGAAAGUAG  GAAGCCGCCGAAA UA                                         C  ||||||||||||| ||                                         U  UCCCGGCGGCUUU CA                                         C U             -  UUGUGUGAUAAAAACCGCCGGACUGUGUCGGCGGCUUUUAU
Stem-loop sequence	GAAGCCGCCGAAAAUAGUACUACUUUUGGCGGCUUUGUCAGCGGCCGCCGAAAGUAGCUCUAUUUUCGGCGGCUGUGUCAGGCCGCCAAAAAUAGUGUGUUACUUUCGGCGGCCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT065567.1	ncRNA:24   UCAUCAUGAUAAAAGCCGCCGAAG   1   ||||||=||||||||||||||*|| targets:1002   AGUAGUGCUAUUUUCGGCGGCCUC   1025 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0298D06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541736.1	ncRNA:24   UCAUCAUGAUAAAAGCCGCCGAAG   1   |*||||||||*|||||||||||*| targets:54   AAUAGUACUAAUUUCGGCGGCUAC   77 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109941206), mRNA	NA	coding protein	psRNATarget
HI407204.1	ncRNA:24   UCAUCAUGAUAAAAGCCGCCGAAG   1   **|||**=|||||||||||||||| targets:59   UUUAGGCUUAUUUUCGGCGGCUUC   82 Target Full Sequence	3.0	Sequence 5329 from Patent EP2074227	NA	coding protein	psRNATarget
JB167665.1	ncRNA:24   UCAUCAUGAUAAAAGCCGCCGAAG   1   **|||**=|||||||||||||||| targets:59   UUUAGGCUUAUUUUCGGCGGCUUC   82 Target Full Sequence	3.0	Sequence 5329 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239334.1	ncRNA:24   UCAUCAUGAUAAAAGCCGCCGAAG   1   **|||**=|||||||||||||||| targets:59   UUUAGGCUUAUUUUCGGCGGCUUC   82 Target Full Sequence	3.0	Sequence 5329 from Patent EP2985353	NA	coding protein	psRNATarget