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BaseInfo

ncRNA ID novel_zma_miR4177
Species Zea mays
Class miRNA
Genome position Chr9:158676129-158676220 [-]
Reference genome RefGen_v4
Source SRR2287160
Length 23
Mature sequence(if miRNA) 70 - CCAUAUGGAUUGGAUGGGAUUGG - 92
Stem-loop(if miRNA) --    A        A          AAAAAU    -AA      UG C
  CCAU UGGAUUGG UGGGAUUGGA      UGUG   CGAUUU  A U
  |||| |||||||| ||||||||||      ||||   ||||||  | U
  GGUA ACCUAACC ACCCUAACCU      ACAC   GUUAGG  U G
UA    C        C          ------    AAA      GU U
Stem-loop sequence CCAUAUGGAUUGGAUGGGAUUGGAAAAAAUUGUGAACGAUUUUGACUUGUUUGGGAUUGAAACACAUCCAAUCCCACCCAAUCCACAUGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020550015.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||||||*
targets:4249   CCAAUCCCAUCCAAUCCAUAUGU   4271

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020550018.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||||||*
targets:4153   CCAAUCCCAUCCAAUCCAUAUGU   4175

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020550016.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||||||*
targets:3829   CCAAUCCCAUCCAAUCCAUAUGU   3851

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550019.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||||||*
targets:3754   CCAAUCCCAUCCAAUCCAUAUGU   3776

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020550017.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||||||*
targets:3767   CCAAUCCCAUCCAAUCCAUAUGU   3789

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020550020.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||||||*
targets:3759   CCAAUCCCAUCCAAUCCAUAUGU   3781

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020550021.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||||||*
targets:3765   CCAAUCCCAUCCAAUCCAUAUGU   3787

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020550024.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||||||*
targets:3711   CCAAUCCCAUCCAAUCCAUAUGU   3733

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020550022.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||||||*
targets:3687   CCAAUCCCAUCCAAUCCAUAUGU   3709

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X8, mRNA NA coding protein psRNATarget
JB166284.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||||||*
targets:93   CCAAUCCCAUCCAAUCCAUAUGU   115

1.0 Sequence 3948 from Patent EP2559767 NA coding protein psRNATarget
HI405823.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||||||*
targets:93   CCAAUCCCAUCCAAUCCAUAUGU   115

1.0 Sequence 3948 from Patent EP2074227 NA coding protein psRNATarget
LQ237953.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||||||*
targets:93   CCAAUCCCAUCCAAUCCAUAUGU   115

1.0 Sequence 3948 from Patent EP2985353 NA coding protein psRNATarget
EU960091.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||=||||||||||=|||
targets:1167   CCAAUCCCGUCCAAUCCAUGUGG   1189

2.5 Zea mays clone 221636 mRNA sequence NA coding protein psRNATarget
XM_020543935.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||=|||||||||||||||*
targets:289   CCAAUCUCAUCCAAUCCAUAUGU   311

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020543936.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||=|||||||||||||||*
targets:289   CCAAUCUCAUCCAAUCCAUAUGU   311

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020543937.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||=|||||||||||||||*
targets:289   CCAAUCUCAUCCAAUCCAUAUGU   311

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020543938.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||=|||||||||||||||*
targets:289   CCAAUCUCAUCCAAUCCAUAUGU   311

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008645434.2
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:2535   CCAAUCCCAUCCAAUCCAUGUGU   2557

2.5 PREDICTED: Zea mays Elongation factor G-1 mitochondrial (pco134899), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020539702.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:2555   CCAAUCCCAUCCAAUCCAUGUGU   2577

2.5 PREDICTED: Zea mays receptor kinase-like protein Xa21 (LOC103628995), mRNA NA coding protein psRNATarget
XM_008682725.2
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |=||||||||||||||||||||*
targets:357   CUAAUCCCAUCCAAUCCAUAUGA   379

1.0 PREDICTED: Zea mays Nucleotide/sugar transporter family protein (LOC100191213), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008669845.2
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:1799   CCAAUCCCAUCCAAUCCAUGUGU   1821

2.5 PREDICTED: Zea mays BcpLH protein (cl15365_1), transcript variant X1, mRNA NA coding protein psRNATarget
BT066364.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:1522   CCAAUCCCAUCCAAUCCAUGUGU   1544

2.5 Zea mays full-length cDNA clone ZM_BFc0009H06 mRNA, complete cds NA coding protein psRNATarget
NM_001175812.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:1522   CCAAUCCCAUCCAAUCCAUGUGU   1544

2.5 Zea mays uncharacterized LOC100383146 (LOC100383146), mRNA NA coding protein psRNATarget
BT062563.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:1292   CCAAUCCCAUCCAAUCCAUGUGU   1314

2.5 Zea mays full-length cDNA clone ZM_BFb0314E20 mRNA, complete cds NA coding protein psRNATarget
NM_001174684.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:1292   CCAAUCCCAUCCAAUCCAUGUGU   1314

2.5 Zea mays Elongation factor G-1 mitochondrial (pco134899), mRNA NA coding protein psRNATarget
BT086570.2
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:217   CCAAUCCCAUCCAAUCCAUGUGU   239

2.5 Zea mays full-length cDNA clone ZM_BFc0184M19 mRNA, complete cds NA coding protein psRNATarget
BT068791.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:1346   CCAAUCCCAUCCAAUCCAUGUGU   1368

2.5 Zea mays full-length cDNA clone ZM_BFb0382D13 mRNA, complete cds NA coding protein psRNATarget
EU960828.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:997   CCAAUCCCAUCCAAUCCAUGUGU   1019

2.5 Zea mays clone 228913 exosome complex exonuclease RRP41 mRNA, complete cds NA coding protein psRNATarget
BT017852.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:940   CCAAUCCCAUCCAAUCCAUGUGU   962

2.5 Zea mays clone EL01N0511C01.c mRNA sequence NA coding protein psRNATarget
AY103687.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:1153   CCAAUCCCAUCCAAUCCAUGUGU   1175

2.5 Zea mays PCO106710 mRNA sequence NA coding protein psRNATarget
BT018247.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:461   CCAAUCCCAUCCAAUCCAUGUGU   483

2.5 Zea mays clone EL01N0563E06.c mRNA sequence NA coding protein psRNATarget
BT070056.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:842   CCAAUCCCAUCCAAUCCAUGUGU   864

2.5 Zea mays full-length cDNA clone ZM_BFb0374H10 mRNA, complete cds NA coding protein psRNATarget
AY111036.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:176   CCAAUCCCAUCCAAUCCAUGUGU   198

2.5 Zea mays CL1582_4 mRNA sequence NA coding protein psRNATarget
EU968099.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:226   CCAAUCCCAUCCAAUCCAUGUGU   248

2.5 Zea mays clone 314232 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
JB166283.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||||||||||||||||||*
targets:93   UCAAUCCCAUCCAAUCCAUAUGU   115

1.0 Sequence 3947 from Patent EP2559767 NA coding protein psRNATarget
HI405822.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||||||||||||||||||*
targets:93   UCAAUCCCAUCCAAUCCAUAUGU   115

1.0 Sequence 3947 from Patent EP2074227 NA coding protein psRNATarget
LQ237952.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||||||||||||||||||*
targets:93   UCAAUCCCAUCCAAUCCAUAUGU   115

1.0 Sequence 3947 from Patent EP2985353 NA coding protein psRNATarget
EZ070047.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||=|||||||||||||||*
targets:34   CCAAUCUCAUCCAAUCCAUAUGU   56

2.0 TSA: Zea mays contig05683, mRNA sequence NA coding protein psRNATarget
HI402987.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:102   CCAAUCCCAUCCAAUCCAUGUGU   124

2.5 Sequence 1112 from Patent EP2074227 NA coding protein psRNATarget
LQ235117.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:102   CCAAUCCCAUCCAAUCCAUGUGU   124

2.5 Sequence 1112 from Patent EP2985353 NA coding protein psRNATarget
JB163448.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:102   CCAAUCCCAUCCAAUCCAUGUGU   124

2.5 Sequence 1112 from Patent EP2559767 NA coding protein psRNATarget
LQ239438.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:94   CCAAUCCCAUCCAAUCCAUGUGU   116

2.5 Sequence 5433 from Patent EP2985353 NA coding protein psRNATarget
JB167769.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:94   CCAAUCCCAUCCAAUCCAUGUGU   116

2.5 Sequence 5433 from Patent EP2559767 NA coding protein psRNATarget
HI407308.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:94   CCAAUCCCAUCCAAUCCAUGUGU   116

2.5 Sequence 5433 from Patent EP2074227 NA coding protein psRNATarget
JB166301.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||=|||||||||||||||*
targets:93   CCAAUCUCAUCCAAUCCAUAUGU   115

2.0 Sequence 3965 from Patent EP2559767 NA coding protein psRNATarget
HI405840.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||=|||||||||||||||*
targets:93   CCAAUCUCAUCCAAUCCAUAUGU   115

2.0 Sequence 3965 from Patent EP2074227 NA coding protein psRNATarget
LQ237970.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||=|||||||||||||||*
targets:93   CCAAUCUCAUCCAAUCCAUAUGU   115

2.0 Sequence 3965 from Patent EP2985353 NA coding protein psRNATarget
EZ059008.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:49   CCAAUCCCAUCCAAUCCAUGUGU   71

2.5 TSA: Zea mays contig60130, mRNA sequence NA coding protein psRNATarget
HI405890.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:83   CCAAUCCCAUCCAAUCCAUGUGU   105

2.5 Sequence 4015 from Patent EP2074227 NA coding protein psRNATarget
JB166351.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:83   CCAAUCCCAUCCAAUCCAUGUGU   105

2.5 Sequence 4015 from Patent EP2559767 NA coding protein psRNATarget
LQ238020.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:83   CCAAUCCCAUCCAAUCCAUGUGU   105

2.5 Sequence 4015 from Patent EP2985353 NA coding protein psRNATarget
HI405892.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4017 from Patent EP2074227 NA coding protein psRNATarget
HI405891.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4016 from Patent EP2074227 NA coding protein psRNATarget
LQ238022.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4017 from Patent EP2985353 NA coding protein psRNATarget
HI405896.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4021 from Patent EP2074227 NA coding protein psRNATarget
HI405895.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4020 from Patent EP2074227 NA coding protein psRNATarget
JB166359.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4023 from Patent EP2559767 NA coding protein psRNATarget
JB166355.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4019 from Patent EP2559767 NA coding protein psRNATarget
HI405894.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4019 from Patent EP2074227 NA coding protein psRNATarget
JB166353.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4017 from Patent EP2559767 NA coding protein psRNATarget
LQ238021.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4016 from Patent EP2985353 NA coding protein psRNATarget
LQ238018.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4013 from Patent EP2985353 NA coding protein psRNATarget
HI405888.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4013 from Patent EP2074227 NA coding protein psRNATarget
JB166357.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4021 from Patent EP2559767 NA coding protein psRNATarget
JB166356.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4020 from Patent EP2559767 NA coding protein psRNATarget
HI405900.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4025 from Patent EP2074227 NA coding protein psRNATarget
JB166352.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4016 from Patent EP2559767 NA coding protein psRNATarget
LQ238030.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4025 from Patent EP2985353 NA coding protein psRNATarget
LQ238025.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4020 from Patent EP2985353 NA coding protein psRNATarget
LQ238026.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4021 from Patent EP2985353 NA coding protein psRNATarget
LQ238028.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4023 from Patent EP2985353 NA coding protein psRNATarget
JB166349.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4013 from Patent EP2559767 NA coding protein psRNATarget
JB166361.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4025 from Patent EP2559767 NA coding protein psRNATarget
HI405898.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4023 from Patent EP2074227 NA coding protein psRNATarget
LQ238024.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:82   CCAAUCCCAUCCAAUCCAUGUGU   104

2.5 Sequence 4019 from Patent EP2985353 NA coding protein psRNATarget
LQ241250.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:78   CCAAUCCCAUCCAAUCCAUGUGU   100

2.5 Sequence 7245 from Patent EP2985353 NA coding protein psRNATarget
JB169581.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:78   CCAAUCCCAUCCAAUCCAUGUGU   100

2.5 Sequence 7245 from Patent EP2559767 NA coding protein psRNATarget
HI409120.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||=||*
targets:78   CCAAUCCCAUCCAAUCCAUGUGU   100

2.5 Sequence 7245 from Patent EP2074227 NA coding protein psRNATarget
XM_020539455.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||*||||
targets:280   CCAAUCCCAUCCAAUCCACAUGG   302

1.5 PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020551501.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||*||||
targets:1291   CCAAUCCCAUCCAAUCCACAUGG   1313

1.5 PREDICTED: Zea mays RNA-binding (RRM/RBD/RNP motifs) family protein (cl12347_2a), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001150851.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||===||||||||||||||
targets:876   CCAAUCUUGUCCAAUCCAUAUGG   898

3.0 Zea mays uncharacterized LOC100277218 (cl4730_1), mRNA NA coding protein psRNATarget
EU967408.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||===||||||||||||||
targets:876   CCAAUCUUGUCCAAUCCAUAUGG   898

3.0 Zea mays clone 302604 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU945995.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||*||||
targets:556   CCAAUCCCAUCCAAUCCACAUGG   578

1.5 Zea mays clone 293035 mRNA sequence NA coding protein psRNATarget
AY110728.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||===||||||||||||||
targets:412   CCAAUCUUGUCCAAUCCAUAUGG   434

3.0 Zea mays CL4730_1 mRNA sequence NA coding protein psRNATarget
JB170575.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||*||||
targets:77   CCAAUCCCAUCCAAUCCACAUGG   99

1.5 Sequence 8239 from Patent EP2559767 NA coding protein psRNATarget
HI410114.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||*||||
targets:77   CCAAUCCCAUCCAAUCCACAUGG   99

1.5 Sequence 8239 from Patent EP2074227 NA coding protein psRNATarget
LQ242244.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||*||||
targets:77   CCAAUCCCAUCCAAUCCACAUGG   99

1.5 Sequence 8239 from Patent EP2985353 NA coding protein psRNATarget
LQ238086.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||||*||
targets:74   CCAAUCCCAUCCAAUCCAUACGG   96

1.5 Sequence 4081 from Patent EP2985353 NA coding protein psRNATarget
HI405956.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||||*||
targets:74   CCAAUCCCAUCCAAUCCAUACGG   96

1.5 Sequence 4081 from Patent EP2074227 NA coding protein psRNATarget
JB166417.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||||||||||||||||*||
targets:74   CCAAUCCCAUCCAAUCCAUACGG   96

1.5 Sequence 4081 from Patent EP2559767 NA coding protein psRNATarget
EZ076130.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |||||||||||||||||||||**
targets:52   CCAAUCCCAUCCAAUCCAUAUAU   74

2.5 TSA: Zea mays contig11767, mRNA sequence NA coding protein psRNATarget
XM_008667530.2
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||=|||||||||||||||*
targets:2817   UCAAUCUCAUCCAAUCCAUAUGU   2839

2.0 PREDICTED: Zea mays probable acyl-activating enzyme 16, chloroplastic (LOC103644323), mRNA NA coding protein psRNATarget
EU963259.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |=||||=|||||||||||||||*
targets:1013   CUAAUCUCAUCCAAUCCAUAUGU   1035

2.0 Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds NA coding protein psRNATarget
BT068211.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |=||||=|||||||||||||||*
targets:770   CUAAUCUCAUCCAAUCCAUAUGU   792

2.0 Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds NA coding protein psRNATarget
NM_001291617.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |=||||=|||||||||||||||*
targets:770   CUAAUCUCAUCCAAUCCAUAUGU   792

2.0 Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA NA coding protein psRNATarget
EU946263.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||=|||||||||||||||*
targets:597   UCAAUCUCAUCCAAUCCAUAUGU   619

2.0 Zea mays clone 302506 mRNA sequence NA coding protein psRNATarget
HI405832.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |=||||=|||||||||||||||*
targets:93   CUAAUCUCAUCCAAUCCAUAUGU   115

2.0 Sequence 3957 from Patent EP2074227 NA coding protein psRNATarget
JB166293.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |=||||=|||||||||||||||*
targets:93   CUAAUCUCAUCCAAUCCAUAUGU   115

2.0 Sequence 3957 from Patent EP2559767 NA coding protein psRNATarget
LQ237962.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |=||||=|||||||||||||||*
targets:93   CUAAUCUCAUCCAAUCCAUAUGU   115

2.0 Sequence 3957 from Patent EP2985353 NA coding protein psRNATarget
XM_008674883.2
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||||||||||*||||||||
targets:3434   UCAAUCCCAUCCAAACCAUAUGG   3456

1.5 PREDICTED: Zea mays hypothetical protein (LOC100381950), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001153131.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |=||||||*||||||||||||||
targets:2321   CUAAUCCCUUCCAAUCCAUAUGG   2343

1.0 Zea mays putative protein kinase superfamily protein (LOC100280200), mRNA NA coding protein psRNATarget
BT055765.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |=||||||*||||||||||||||
targets:2321   CUAAUCCCUUCCAAUCCAUAUGG   2343

1.0 Zea mays full-length cDNA clone ZM_BFb0178P09 mRNA, complete cds NA coding protein psRNATarget
XM_008658561.2
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||||*||||||||||||||
targets:301   UCAAUCCCCUCCAAUCCAUAUGG   323

1.0 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
EU956568.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||||*||||||||||||||
targets:1630   UCAAUCCCCUCCAAUCCAUAUGG   1652

1.0 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
XM_020548987.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||||*||||||||||||||
targets:1980   UCAAUCCCCUCCAAUCCAUAUGG   2002

1.0 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||||*||||||||||||||
targets:1980   UCAAUCCCCUCCAAUCCAUAUGG   2002

1.0 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_020545207.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||||*||||||||||||||
targets:22   UCAAUCCCCUCCAAUCCAUAUGG   44

1.0 PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA NA coding protein psRNATarget
BT024027.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  |=||||||*||||||||||||||
targets:1643   CUAAUCCCUUCCAAUCCAUAUGG   1665

1.0 Zea mays clone EL01N0420G12 mRNA sequence NA coding protein psRNATarget
XM_008666525.2
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||||*||||||||||||||
targets:917   UCAAUCCCCUCCAAUCCAUAUGG   939

1.0 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
EU959345.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||||*||||||||||||||
targets:845   UCAAUCCCCUCCAAUCCAUAUGG   867

1.0 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959258.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||||*||||||||||||||
targets:844   UCAAUCCCCUCCAAUCCAUAUGG   866

1.0 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959053.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||||*||||||||||||||
targets:844   UCAAUCCCCUCCAAUCCAUAUGG   866

1.0 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959055.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||||*||||||||||||||
targets:846   UCAAUCCCCUCCAAUCCAUAUGG   868

1.0 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
BT062922.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||||*||||||||||||||
targets:898   UCAAUCCCCUCCAAUCCAUAUGG   920

1.0 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
BT064935.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||||*||||||||||||||
targets:836   UCAAUCCCUUCCAAUCCAUAUGG   858

1.0 Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds NA coding protein psRNATarget
XM_020539810.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||||*||||||||||||||
targets:699   UCAAUCCCCUCCAAUCCAUAUGG   721

1.0 PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA NA coding protein psRNATarget
NM_001348011.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  =|||||||*||||||||||||||
targets:445   UCAAUCCCCUCCAAUCCAUAUGG   467

1.0 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
HI409644.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||=|||||||||||*||||
targets:98   CCAAUCUCAUCCAAUCCACAUGG   120

2.5 Sequence 7769 from Patent EP2074227 NA coding protein psRNATarget
LQ241774.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||=|||||||||||*||||
targets:98   CCAAUCUCAUCCAAUCCACAUGG   120

2.5 Sequence 7769 from Patent EP2985353 NA coding protein psRNATarget
JB170105.1
ncRNA:23   GGUUAGGGUAGGUUAGGUAUACC   1
  ||||||=|||||||||||*||||
targets:98   CCAAUCUCAUCCAAUCCACAUGG   120

2.5 Sequence 7769 from Patent EP2559767 NA coding protein psRNATarget
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