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BaseInfo

ncRNA ID	novel_zma_miR4175
Species	Zea mays
Class	miRNA
Genome position	Chr9:153516828-153516964 [+]
Reference genome	RefGen_v4
Source	SRR2287160;SRR2287161
Length	24
Mature sequence(if miRNA)	1 - AGAGCUUGUUCGGUUAGAGGUGGA - 24
Stem-loop(if miRNA)	--  A       C    A          UGGGA       A   A   G         CC          A   AG GCUUGUU GGUU GAGGUGGAUU     GAGGGGA UUG AGG GAUUAAAUC  CUUUUAUACA A   || ||||||| |||| ||||||||||     ||||||| ||| ||| |||||||||  ||||||||||   UC CGAACAA CCAA CUCCACUUAG     CUCCUCU AAC UCC CUAAUUUAG  GAGGAUAUGU U AU  C       A    A          -----       A   C   A         UA          U
Stem-loop sequence	AGAGCUUGUUCGGUUAGAGGUGGAUUUGGGAGAGGGGAAUUGAAGGGGAUUAAAUCCCCUUUUAUACAAAUUUGUAUAGGAGAUGAUUUAAUCACCUCCAAAUCUCCUCGAUUCACCUCAAACCAAACAAGCCCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT054119.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGAGA   1   |||||=|||||||||||||||*|| targets:463   UCCACUUCUAACCGAACAAGCCCU   486 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0117A22 mRNA, complete cds	NA	coding protein	psRNATarget
BT042029.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGAGA   1   ||||||||*||||*|||||||||| targets:276   UCCACCUCAAACCAAACAAGCUCU   299 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0114D19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGAGA   1   ||||||*||||||||||||||*|| targets:3293   UCCACCCCUAACCGAACAAGCCCU   3316 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
XM_020550140.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGAGA   1   ||||=|*||||||||||||||*|| targets:3606   UCCAUCCCUAACCGAACAAGCCCU   3629 Target Full Sequence	2.5	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675573.2	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGAGA   1   ||||=|*||||||||||||||*|| targets:3606   UCCAUCCCUAACCGAACAAGCCCU   3629 Target Full Sequence	2.5	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001323290.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGAGA   1   |==-==||||||||||||||||=| targets:285   UUU-UUUCUAACCGAACAAGCUUU   307 Target Full Sequence	2.5	Zea mays multiple C2 and transmembrane domain-containing protein 2-like (LOC103646183), mRNA	NA	coding protein	psRNATarget