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BaseInfo

ncRNA ID	novel_zma_miR4165
Species	Zea mays
Class	miRNA
Genome position	Chr9:3662212-3662281 [-]
Reference genome	RefGen_v4
Source	SRR2287160;SRR2287162
Length	24
Mature sequence(if miRNA)	1 - CGGCCUCAGGGCCGGACUGUCUGC - 24
Stem-loop(if miRNA)	--    C         AC    G     C     G   AGAC GUCUGGCCC  AGGU CGGAC GUUCG A   |||| |||||||||  |||| ||||| ||||| C   UCUG CAGGCCGGG  UCCG GCCUG CAGGC C CG    U         AC    -     C     G
Stem-loop sequence	AGACCGUCUGGCCCACAGGUGCGGACCGUUCGGACCGCGGACCGUCCGGCCUCAGGGCCGGACUGUCUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU942898.1	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=||||||||||||||||||||| targets:119   GCGGACAGUCCGGCCCUGAGGCCG   142 Target Full Sequence	0.0	Zea mays clone 1544698 mRNA sequence	NA	coding protein	psRNATarget
EU974386.1	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=||||||||||||||||||||| targets:808   GCGGACAGUCCGGCCCUGAGGCCG   831 Target Full Sequence	0.0	Zea mays clone 447822 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT087630.1	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=||||||||||||||||||||| targets:845   GCGGACAGUCCGGCCCUGAGGCCG   868 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0140K18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196761.1	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=||||||||||||||||||||| targets:845   GCGGACAGUCCGGCCCUGAGGCCG   868 Target Full Sequence	0.0	Zea mays uncharacterized LOC100502284 (LOC100502284), mRNA	NA	coding protein	psRNATarget
NM_001176396.2	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=||||||||||||||||||||| targets:1016   GCGGACAGUCCGGCCCUGAGGCCG   1039 Target Full Sequence	0.0	Zea mays Amidohydrolase family (LOC100383761), mRNA	NA	coding protein	psRNATarget
BT068223.1	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=||||||||||||||||||||| targets:1016   GCGGACAGUCCGGCCCUGAGGCCG   1039 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0087M02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008672136.2	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=||||||||||||||||||||| targets:1577   GCGGACAGUCCGGCCCUGAGGCCG   1600 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103647624 (LOC103647624), mRNA	NA	coding protein	psRNATarget
EU943239.1	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=|||=||||||||||||||||| targets:286   GCGGACGGUCCGGCCCUGAGGCCG   309 Target Full Sequence	1.0	Zea mays clone 1589479 mRNA sequence	NA	coding protein	psRNATarget
EU949855.1	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=|||=||||||||||||||||| targets:374   GCGGACGGUCCGGCCCUGAGGCCG   397 Target Full Sequence	1.0	Zea mays clone 449025 mRNA sequence	NA	coding protein	psRNATarget
XM_008658706.2	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=|||=||||||||||||||||| targets:1388   GCGGACGGUCCGGCCCUGAGGCCG   1411 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103636343 (LOC103636343), mRNA	NA	coding protein	psRNATarget
NM_001174685.1	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=|||=||||||||||||||||| targets:1312   GCGGACGGUCCGGCCCUGAGGCCG   1335 Target Full Sequence	1.0	Zea mays uncharacterized LOC100381908 (LOC100381908), mRNA	NA	coding protein	psRNATarget
BT062567.1	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=|||=||||||||||||||||| targets:1312   GCGGACGGUCCGGCCCUGAGGCCG   1335 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0315B06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=|||=||||||||||||||||| targets:2169   GCGGACGGUCCGGCCCUGAGGCCG   2192 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
NM_001156399.1	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=|||||||||||*||||||||| targets:1142   GCGGACAGUCCGGCGCUGAGGCCG   1165 Target Full Sequence	1.5	Zea mays ethylene responsive protein (LOC100283499), mRNA	NA	coding protein	psRNATarget
EU964936.1	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=|||||||||||*||||||||| targets:1142   GCGGACAGUCCGGCGCUGAGGCCG   1165 Target Full Sequence	1.5	Zea mays clone 282666 ethylene responsive protein mRNA, complete cds	NA	coding protein	psRNATarget
BT062568.1	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=|||*||||||||||||||||| targets:1399   GCGGACUGUCCGGCCCUGAGGCCG   1422 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0315C08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174686.1	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=|||*||||||||||||||||| targets:1399   GCGGACUGUCCGGCCCUGAGGCCG   1422 Target Full Sequence	1.0	Zea mays Cysteine-rich receptor-like protein kinase 10 (LOC100381909), mRNA	NA	coding protein	psRNATarget
BT018646.1	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=||||||||||||||||*|||| targets:1534   GCGGACAGUCCGGCCCUGAAGCCG   1557 Target Full Sequence	1.5	Zea mays clone EL01N0505C04.d mRNA sequence	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=|||=|||||||||*||||||| targets:723   GCGGACGGUCCGGCCCGGAGGCCG   746 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   CGUCUGUCAGGCCGGGACUCCGGC   1   ||=|||=|||||||||*||||||| targets:723   GCGGACGGUCCGGCCCGGAGGCCG   746 Target Full Sequence	2.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget