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BaseInfo

ncRNA ID novel_zma_miR4148
Species Zea mays
Class miRNA
Genome position Chr1:91227466-91227516 [-]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 28 - AGACUGUCCGGUGGCGCACCAGAC - 51
Stem-loop(if miRNA) --A   U        -  G      A
   GAC GUCCGGUG GC CACCAG C
   ||| |||||||| || |||||| U
   CUG CAGGCCAC CG GUGGUC G
GGC   U        G  -      U
Stem-loop sequence AGACUGUCCGGUGGCGCACCAGACUGUCUGGUGGCGCACCGGACUGUCCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB170370.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||||||||*|||||||||||||*
targets:29   GUCUGGUGCACCACCGGACAGUCC   52

2.0 Sequence 8034 from Patent EP2559767 NA coding protein psRNATarget
HI409909.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||||||||*|||||||||||||*
targets:29   GUCUGGUGCACCACCGGACAGUCC   52

2.0 Sequence 8034 from Patent EP2074227 NA coding protein psRNATarget
LQ242039.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||||||||*|||||||||||||*
targets:29   GUCUGGUGCACCACCGGACAGUCC   52

2.0 Sequence 8034 from Patent EP2985353 NA coding protein psRNATarget
EU940831.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||||||||*|||||||||||||*
targets:530   GUCUGGUGCACCACCGGACAGUCC   553

2.0 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
NM_001349964.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||||||||||||||||*
targets:2989   GUCCGGUGCGCCACCGGACAGUCC   3012

1.0 Zea mays uncharacterized LOC100278112 (IDP592), mRNA NA coding protein psRNATarget
EU940845.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||||||||*=||||||||||||*
targets:1466   GUCUGGUGCCUCACCGGACAGUCC   1489

3.0 Zea mays clone 1163633 mRNA sequence NA coding protein psRNATarget
BT061709.2
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*||||||||||||||||||*|
targets:604   GUCCGGUGCGCCACCGGACAGUGU   627

1.5 Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds NA coding protein psRNATarget
NM_001174416.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*||||||||||||||||||*|
targets:604   GUCCGGUGCGCCACCGGACAGUGU   627

1.5 Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA NA coding protein psRNATarget
BT068871.2
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*||||||||||||||
targets:704   GUCCGGUGCACCACCGGACAGUCU   727

1.0 Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds NA coding protein psRNATarget
NM_001176621.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*||||||||||||||
targets:704   GUCCGGUGCACCACCGGACAGUCU   727

1.0 Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA NA coding protein psRNATarget
BT060603.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||||||||||||||*||
targets:1444   GUCCGGUGCGCCACCGGACAGCCU   1467

1.5 Zea mays full-length cDNA clone ZM_BFb0021N16 mRNA, complete cds NA coding protein psRNATarget
BT060603.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*||||||||||||*|
targets:1098   GUCCGGUGCACCACCGGACAGUGU   1121

2.5 Zea mays full-length cDNA clone ZM_BFb0021N16 mRNA, complete cds NA coding protein psRNATarget
EZ078322.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*||||=||||||||||*||||
targets:40   GUCCGGUGUGCCACCGGACUGUCU   63

2.5 TSA: Zea mays contig13961, mRNA sequence NA coding protein psRNATarget
BT086229.2
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*||||**|||||||||||||*
targets:644   GUCCGGUGAACCACCGGACAGUCC   667

3.0 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
HI409932.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  ||||||||**|||||||||||||*
targets:26   GUCUGGUGGCCCACCGGACAGUCC   49

3.0 Sequence 8057 from Patent EP2074227 NA coding protein psRNATarget
JB170393.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  ||||||||**|||||||||||||*
targets:26   GUCUGGUGGCCCACCGGACAGUCC   49

3.0 Sequence 8057 from Patent EP2559767 NA coding protein psRNATarget
LQ242062.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  ||||||||**|||||||||||||*
targets:26   GUCUGGUGGCCCACCGGACAGUCC   49

3.0 Sequence 8057 from Patent EP2985353 NA coding protein psRNATarget
JB169399.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:27   GUCCGGUGCACCACCGGACAGUCC   50

2.0 Sequence 7063 from Patent EP2559767 NA coding protein psRNATarget
LQ241168.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:27   GUCCGGUGCACCACCGGACAGUCC   50

2.0 Sequence 7163 from Patent EP2985353 NA coding protein psRNATarget
HI408938.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:27   GUCCGGUGCACCACCGGACAGUCC   50

2.0 Sequence 7063 from Patent EP2074227 NA coding protein psRNATarget
JB169499.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:27   GUCCGGUGCACCACCGGACAGUCC   50

2.0 Sequence 7163 from Patent EP2559767 NA coding protein psRNATarget
HI409038.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:27   GUCCGGUGCACCACCGGACAGUCC   50

2.0 Sequence 7163 from Patent EP2074227 NA coding protein psRNATarget
LQ242313.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:27   GUCCGGUGCACCACCGGACAGUCC   50

2.0 Sequence 8308 from Patent EP2985353 NA coding protein psRNATarget
HI410183.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:27   GUCCGGUGCACCACCGGACAGUCC   50

2.0 Sequence 8308 from Patent EP2074227 NA coding protein psRNATarget
LQ241068.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:27   GUCCGGUGCACCACCGGACAGUCC   50

2.0 Sequence 7063 from Patent EP2985353 NA coding protein psRNATarget
JB170644.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:27   GUCCGGUGCACCACCGGACAGUCC   50

2.0 Sequence 8308 from Patent EP2559767 NA coding protein psRNATarget
JB169901.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:27   GUCCGGUGCACCACCGGACAGUCC   50

2.0 Sequence 7565 from Patent EP2559767 NA coding protein psRNATarget
HI409440.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:27   GUCCGGUGCACCACCGGACAGUCC   50

2.0 Sequence 7565 from Patent EP2074227 NA coding protein psRNATarget
LQ241570.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:27   GUCCGGUGCACCACCGGACAGUCC   50

2.0 Sequence 7565 from Patent EP2985353 NA coding protein psRNATarget
BT068112.2
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:721   GUCCGGUGCACCACCGGACAGUCC   744

2.0 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT038885.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|*|||||||||||||||||*
targets:1024   GUCCGAUGCGCCACCGGACAGUCC   1047

2.0 Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:813   GUCCGGUGCACCACCGGACAGUCC   836

2.0 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
BT065921.2
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:813   GUCCGGUGCACCACCGGACAGUCC   836

2.0 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
BT066461.2
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||||||||||||||*|*
targets:500   GUCCGGUGCGCCACCGGACAGCCA   523

2.5 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
BT066461.2
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:847   GUCCGGUGCACCACCGGACAGUCC   870

2.0 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
EU968231.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|*|||||||||||||||||*
targets:1395   GUCCGAUGCGCCACCGGACAGUCC   1418

2.0 Zea mays clone 317172 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:797   GUCCGGUGCACCACCGGACAGUCC   820

2.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:797   GUCCGGUGCACCACCGGACAGUCC   820

2.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:660   GUCCGGUGCACCACCGGACAGUCC   683

2.0 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
BT061124.2
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:660   GUCCGGUGCACCACCGGACAGUCC   683

2.0 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*|||||||||||||*
targets:4708   GUCCGGUGCACCACCGGACAGUCC   4731

2.0 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
BT069074.2
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*=||||||||||||*
targets:677   GUCCGGUGCUUCACCGGACAGUCC   700

3.0 Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds NA coding protein psRNATarget
BT061123.2
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*=||||||||||||*
targets:350   GUCCGGUGCCUCACCGGACAGUCC   373

3.0 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
NM_001176828.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*||||||||||||*|
targets:507   GUCCGGUGCACCACCGGACAGUGU   530

2.5 Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA NA coding protein psRNATarget
BT069634.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*||||||||||||*|
targets:507   GUCCGGUGCACCACCGGACAGUGU   530

2.5 Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds NA coding protein psRNATarget
BT064671.1
ncRNA:24   CAGACCACGCGGUGGCCUGUCAGA   1
  |||*|||||*||||||||||||*|
targets:997   GUCCGGUGCACCACCGGACAGUGU   1020

2.5 Zea mays full-length cDNA clone ZM_BFb0008J22 mRNA, complete cds NA coding protein psRNATarget
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