Search result

BaseInfo

ncRNA ID	novel_zma_miR4147
Species	Zea mays
Class	miRNA
Genome position	Chr7:160765886-160765951 [-]
Reference genome	RefGen_v4
Source	SRR1583941
Length	24
Mature sequence(if miRNA)	43 - AAACAUGAAGAGCUAAAAGUGACU - 66
Stem-loop(if miRNA)	--     U                    -  GA   AAACA GAAGAGCUAAAAGUGACUAC AU  C   ||||| |||||||||||||||||||| ||  U   UUUGU CUUCUCGAUUUUCACUGAUG UA  A GA     C                    G  AA
Stem-loop sequence	AAACAUGAAGAGCUAAAAGUGACUACAUGACUAAAAUGGUAGUCACUUUUAGCUCUUCCUGUUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020538817.1	ncRNA:24   UCAGUGAAAAUCGAGAAGUACAAA   1   ||||||||||||||||||*||||| targets:1354   AGUCACUUUUAGCUCUUCCUGUUU   1377 Target Full Sequence	1.5	PREDICTED: Zea mays DNA damage-binding protein 1a (PCO068526), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020538816.1	ncRNA:24   UCAGUGAAAAUCGAGAAGUACAAA   1   ||||||||||||||||||*||||| targets:1377   AGUCACUUUUAGCUCUUCCUGUUU   1400 Target Full Sequence	1.5	PREDICTED: Zea mays DNA damage-binding protein 1a (PCO068526), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008680286.1	ncRNA:24   UCAGUGAAAAUCGAGAAGUACAAA   1   **|=*|||||=|||=||||||||| targets:1599   UUUUUCUUUUGGCUUUUCAUGUUU   1622 Target Full Sequence	2.5	PREDICTED: Zea mays exopolygalacturonase (LOC103653359), mRNA	NA	coding protein	psRNATarget