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BaseInfo

ncRNA ID	novel_zma_miR4146
Species	Zea mays
Class	miRNA
Genome position	Chr8:63801433-63801497 [-]
Reference genome	RefGen_v4
Source	SRR2287160;SRR2287165
Length	24
Mature sequence(if miRNA)	42 - AUGUGUUGAGGUGGAUUAGGGUAU - 65
Stem-loop(if miRNA)	--                 A    A   A      AUGUGUUGAGGUGGAUU GGGU UAA UUAG   ||||||||||||||||| |||| ||| |||U   UACAUAACUCCACCUAA CCCA AUU AAUU UG                 C    C   G
Stem-loop sequence	AUGUGUUGAGGUGGAUUAGGGUAUAAAUUAGUUUAAGUUACACCCCAAUCCACCUCAAUACAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI402950.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*|||||||||||||||||=|||| targets:60   ACACCCUAAUCCACCUCAAUACAU   83 Target Full Sequence	1.5	Sequence 1075 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235080.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*|||||||||||||||||=|||| targets:60   ACACCCUAAUCCACCUCAAUACAU   83 Target Full Sequence	1.5	Sequence 1075 from Patent EP2985353	NA	coding protein	psRNATarget
JB163411.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*|||||||||||||||||=|||| targets:60   ACACCCUAAUCCACCUCAAUACAU   83 Target Full Sequence	1.5	Sequence 1075 from Patent EP2559767	NA	coding protein	psRNATarget
EZ069719.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*|||||||||||||||||=|||| targets:53   ACACCCUAAUCCACCUCAAUACAU   76 Target Full Sequence	1.5	TSA: Zea mays contig05355, mRNA sequence	NA	coding protein	psRNATarget
HI403492.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||=||||||||||||||=|||| targets:76   ACACUCUAAUCCACCUCAAUACAU   99 Target Full Sequence	1.5	Sequence 1617 from Patent EP2074227	NA	coding protein	psRNATarget
JB163953.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||=||||||||||||||=|||| targets:76   ACACUCUAAUCCACCUCAAUACAU   99 Target Full Sequence	1.5	Sequence 1617 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235622.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||=||||||||||||||=|||| targets:76   ACACUCUAAUCCACCUCAAUACAU   99 Target Full Sequence	1.5	Sequence 1617 from Patent EP2985353	NA	coding protein	psRNATarget
AY110392.1	ncRNA:24   UAUG--GGA-UUAGGUGGAGUUGUGUA   1   ||||--|||-||||||||||||||||| targets:149   AUACACCCUCAAUCCACCUCAACACAU   175 Target Full Sequence	2.0	Zea mays CL7038_2 mRNA sequence	NA	coding protein	psRNATarget
JB163470.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||=|||||=||||||||=|||| targets:88   ACACUCUAAUUCACCUCAAUACAU   111 Target Full Sequence	2.5	Sequence 1134 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235139.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||=|||||=||||||||=|||| targets:88   ACACUCUAAUUCACCUCAAUACAU   111 Target Full Sequence	2.5	Sequence 1134 from Patent EP2985353	NA	coding protein	psRNATarget
HI403009.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||=|||||=||||||||=|||| targets:88   ACACUCUAAUUCACCUCAAUACAU   111 Target Full Sequence	2.5	Sequence 1134 from Patent EP2074227	NA	coding protein	psRNATarget
HI403486.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||=|*||||||||||||||||| targets:58   ACACUCAAAUCCACCUCAACACAU   81 Target Full Sequence	1.0	Sequence 1611 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235616.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||=|*||||||||||||||||| targets:58   ACACUCAAAUCCACCUCAACACAU   81 Target Full Sequence	1.0	Sequence 1611 from Patent EP2985353	NA	coding protein	psRNATarget
JB163947.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||=|*||||||||||||||||| targets:58   ACACUCAAAUCCACCUCAACACAU   81 Target Full Sequence	1.0	Sequence 1611 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235096.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*|||*|||||||||||||=|||| targets:60   ACACCAUAAUCCACCUCAAUACAU   83 Target Full Sequence	2.5	Sequence 1091 from Patent EP2985353	NA	coding protein	psRNATarget
HI402966.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*|||*|||||||||||||=|||| targets:60   ACACCAUAAUCCACCUCAAUACAU   83 Target Full Sequence	2.5	Sequence 1091 from Patent EP2074227	NA	coding protein	psRNATarget
JB163427.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*|||*|||||||||||||=|||| targets:60   ACACCAUAAUCCACCUCAAUACAU   83 Target Full Sequence	2.5	Sequence 1091 from Patent EP2559767	NA	coding protein	psRNATarget
HI403455.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||*=|||||||||||||||||| targets:60   ACACAUUAAUCCACCUCAACACAU   83 Target Full Sequence	1.0	Sequence 1580 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235196.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||||*||||||||||||=|||| targets:61   ACACCCCAAUCCACCUCAAUACAU   84 Target Full Sequence	2.5	Sequence 1191 from Patent EP2985353	NA	coding protein	psRNATarget
HI403066.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||||*||||||||||||=|||| targets:61   ACACCCCAAUCCACCUCAAUACAU   84 Target Full Sequence	2.5	Sequence 1191 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235585.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||*=|||||||||||||||||| targets:60   ACACAUUAAUCCACCUCAACACAU   83 Target Full Sequence	1.0	Sequence 1580 from Patent EP2985353	NA	coding protein	psRNATarget
JB163527.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||||*||||||||||||=|||| targets:61   ACACCCCAAUCCACCUCAAUACAU   84 Target Full Sequence	2.5	Sequence 1191 from Patent EP2559767	NA	coding protein	psRNATarget
JB163916.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||*=|||||||||||||||||| targets:60   ACACAUUAAUCCACCUCAACACAU   83 Target Full Sequence	1.0	Sequence 1580 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235393.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*|=||*||||||||||||||||| targets:62   ACAUCCCAAUCCACCUCAACACAU   85 Target Full Sequence	1.0	Sequence 1388 from Patent EP2985353	NA	coding protein	psRNATarget
JB163723.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*|=||*||||||||||||||||| targets:62   ACAUCCCAAUCCACCUCAACACAU   85 Target Full Sequence	1.0	Sequence 1387 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235392.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*|=||*||||||||||||||||| targets:62   ACAUCCCAAUCCACCUCAACACAU   85 Target Full Sequence	1.0	Sequence 1387 from Patent EP2985353	NA	coding protein	psRNATarget
HI403262.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*|=||*||||||||||||||||| targets:62   ACAUCCCAAUCCACCUCAACACAU   85 Target Full Sequence	1.0	Sequence 1387 from Patent EP2074227	NA	coding protein	psRNATarget
HI403263.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*|=||*||||||||||||||||| targets:62   ACAUCCCAAUCCACCUCAACACAU   85 Target Full Sequence	1.0	Sequence 1388 from Patent EP2074227	NA	coding protein	psRNATarget
JB163724.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*|=||*||||||||||||||||| targets:62   ACAUCCCAAUCCACCUCAACACAU   85 Target Full Sequence	1.0	Sequence 1388 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238868.1	ncRNA:24   UA-UGGGAUUAGGUGGAGUUGUGUA   1   ||-|=||*||||||||||||=|||| targets:63   AUGAUCCCAAUCCACCUCAAUACAU   87 Target Full Sequence	2.5	Sequence 4863 from Patent EP2985353	NA	coding protein	psRNATarget
HI406738.1	ncRNA:24   UA-UGGGAUUAGGUGGAGUUGUGUA   1   ||-|=||*||||||||||||=|||| targets:63   AUGAUCCCAAUCCACCUCAAUACAU   87 Target Full Sequence	2.5	Sequence 4863 from Patent EP2074227	NA	coding protein	psRNATarget
JB167199.1	ncRNA:24   UA-UGGGAUUAGGUGGAGUUGUGUA   1   ||-|=||*||||||||||||=|||| targets:63   AUGAUCCCAAUCCACCUCAAUACAU   87 Target Full Sequence	2.5	Sequence 4863 from Patent EP2559767	NA	coding protein	psRNATarget
EU963895.1	ncRNA:24   UA-UGGGAUUAGGUGGAGUUGUGUA   1   ||-|=||*||||||||||||=|||| targets:979   AUGAUCCCAAUCCACCUCAAUACAU   1003 Target Full Sequence	2.5	Zea mays clone 273839 protein SFT2 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235328.1	ncRNA:24   UAUG--GGAUUAGGUGGAGUUGUGUA   1   =|||--|=*||||||||||||||||| targets:60   GUACAACUCAAUCCACCUCAACACAU   85 Target Full Sequence	2.0	Sequence 1323 from Patent EP2985353	NA	coding protein	psRNATarget
JB163659.1	ncRNA:24   UAUG--GGAUUAGGUGGAGUUGUGUA   1   =|||--|=*||||||||||||||||| targets:60   GUACAACUCAAUCCACCUCAACACAU   85 Target Full Sequence	2.0	Sequence 1323 from Patent EP2559767	NA	coding protein	psRNATarget
HI403198.1	ncRNA:24   UAUG--GGAUUAGGUGGAGUUGUGUA   1   =|||--|=*||||||||||||||||| targets:60   GUACAACUCAAUCCACCUCAACACAU   85 Target Full Sequence	2.0	Sequence 1323 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235478.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||=*||||=||||||||||||| targets:62   ACACUAUAAUUCACCUCAACACAU   85 Target Full Sequence	2.0	Sequence 1473 from Patent EP2985353	NA	coding protein	psRNATarget
HI403348.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||=*||||=||||||||||||| targets:62   ACACUAUAAUUCACCUCAACACAU   85 Target Full Sequence	2.0	Sequence 1473 from Patent EP2074227	NA	coding protein	psRNATarget
JB163809.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||=*||||=||||||||||||| targets:62   ACACUAUAAUUCACCUCAACACAU   85 Target Full Sequence	2.0	Sequence 1473 from Patent EP2559767	NA	coding protein	psRNATarget
BT053958.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||*||||||||*|||||||||| targets:1447   ACACACUAAUCCAACUCAACACAU   1470 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0073M17 mRNA, complete cds	NA	coding protein	psRNATarget
BT066939.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||*||||||||*|||||||||| targets:1521   ACACACUAAUCCAACUCAACACAU   1544 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0114E07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153225.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||*||||||||*|||||||||| targets:1653   ACACACUAAUCCAACUCAACACAU   1676 Target Full Sequence	1.5	Zea mays choline/ethanolamine kinase (LOC100280298), mRNA	NA	coding protein	psRNATarget
BT055962.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||*||||||||*|||||||||| targets:1653   ACACACUAAUCCAACUCAACACAU   1676 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0070E08 mRNA, complete cds	NA	coding protein	psRNATarget
EU962737.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||*||||||||*|||||||||| targets:1674   ACACACUAAUCCAACUCAACACAU   1697 Target Full Sequence	1.5	Zea mays clone 245096 mRNA sequence	NA	coding protein	psRNATarget
XM_020547679.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||*||||||||*|||||||||| targets:1695   ACACACUAAUCCAACUCAACACAU   1718 Target Full Sequence	1.5	PREDICTED: Zea mays choline/ethanolamine kinase (LOC100280298), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547680.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*||*||||||||*|||||||||| targets:1708   ACACACUAAUCCAACUCAACACAU   1731 Target Full Sequence	1.5	PREDICTED: Zea mays choline/ethanolamine kinase (LOC100280298), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT085111.1	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |*|==|*||||||||||||=|||| targets:1191   AAAUUCCAAUCCACCUCAAUACAU   1214 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008672302.2	ncRNA:24   UAUGGGAUUAGGUGGAGUUGUGUA   1   |||*|**||||||||||||||||| targets:2495   AUAACACAAUCCACCUCAACACAU   2518 Target Full Sequence	2.0	PREDICTED: Zea mays protein SHORT-ROOT 1 (LOC103647790), mRNA	NA	coding protein	psRNATarget