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BaseInfo

ncRNA ID	novel_zma_miR4144
Species	Zea mays
Class	miRNA
Genome position	Chr8:103451162-103451212 [-]
Reference genome	RefGen_v4
Source	SRR2287160;SRR5100255
Length	24
Mature sequence(if miRNA)	28 - ACCAGGUCGCGGACUGUUCGGCCC - 51
Stem-loop(if miRNA)	-ACC   U       U   --          AGG CGCGGAC GUU  CGGCCC     ||| ||||||| |||  |||||C     UCC GCGCCUG CAG  GCCGGU CGUC   -       C   GC
Stem-loop sequence	ACCAGGUCGCGGACUGUUCGGCCCCUGGCCGCGGACCGUCCGCGCCUCUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968855.1	ncRNA:24   CCCGGCUUGUCAGGCGCUGGACCA   1   ||||||=||=|||||||||||||| targets:720   GGGCCGGACGGUCCGCGACCUGGU   743 Target Full Sequence	2.0	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   CCCGGCUUGUCAGGCGCUGGACCA   1   ||||||=||=|||||||||||||* targets:649   GGGCCGGACGGUCCGCGACCUGGC   672 Target Full Sequence	3.0	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
EZ104830.1	ncRNA:24   CCCGGCUUGUCAGGCGCUGGACCA   1   ||||||=||=|||||||||||||* targets:42   GGGCCGGACGGUCCGCGACCUGGC   65 Target Full Sequence	3.0	TSA: Zea mays contig40487, mRNA sequence	NA	coding protein	psRNATarget
EZ099059.1	ncRNA:24   CCCGGCUUGUCAGGCGCUGGACCA   1   ||||||=||=|||||||||||||* targets:27   GGGCCGGACGGUCCGCGACCUGGC   50 Target Full Sequence	3.0	TSA: Zea mays contig34714, mRNA sequence	NA	coding protein	psRNATarget
BT061906.1	ncRNA:24   CCCGGCUUGUCAGGCGCUGGACCA   1   ||||||=||=|||||||||||||* targets:212   GGGCCGGACGGUCCGCGACCUGGC   235 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds	NA	coding protein	psRNATarget
EU971146.1	ncRNA:24   CCCGGCUUGUCAGGCGCUGGACCA   1   ||||||=||=|||||||||||||* targets:348   GGGCCGGACGGUCCGCGACCUGGC   371 Target Full Sequence	3.0	Zea mays clone 358377 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT034345.1	ncRNA:24   CCCGGCUUGUCAGGCGCUGGACCA   1   ||||||=||=|||||||||||||* targets:684   GGGCCGGACGGUCCGCGACCUGGC   707 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0009F02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540955.1	ncRNA:24   CCCGGCUUGUCAGGCGCUGGACCA   1   |*||||=||=|||||||||||||* targets:947   GAGCCGGACGGUCCGCGACCUGGC   970 Target Full Sequence	3.0	PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At1g07650 (LOC103632613), transcript variant X5, mRNA	NA	coding protein	psRNATarget
NM_001175289.1	ncRNA:24   CCCG-GCUUGUCAGGCGCUGGACCA   1   *|||-||=||=|||||||||||||* targets:1679   AGGCGCGGACGGUCCGCGACCUGGC   1703 Target Full Sequence	3.0	Zea mays uncharacterized LOC100382557 (LOC100382557), mRNA	NA	coding protein	psRNATarget
BT064749.1	ncRNA:24   CCCG-GCUUGUCAGGCGCUGGACCA   1   *|||-||=||=|||||||||||||* targets:1679   AGGCGCGGACGGUCCGCGACCUGGC   1703 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0101G18 mRNA, complete cds	NA	coding protein	psRNATarget
EZ049111.1	ncRNA:24   CCCG-GCUUGUCAGGCGCUGGACCA   1   *||=-||=||=|||||||||||||* targets:22   AGGUGCGGACGGUCCGCGACCUGGC   46 Target Full Sequence	3.0	TSA: Zea mays contig50229, mRNA sequence	NA	coding protein	psRNATarget