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BaseInfo

ncRNA ID novel_zma_miR4141
Species Zea mays
Class miRNA
Genome position Chr8:139410995-139411136 [-]
Reference genome RefGen_v4
Source SRR2287160;SRR5451003
Length 24
Mature sequence(if miRNA) 119 - AAGGGCUUGUUCGGUUAUUUCCAA - 142
Stem-loop(if miRNA) -A     U    C     U   -   AA  CA      -  A          AAAAAU    -AA   G  UG C
  AGGGC UGUU GGUUA UUC CAA  CA  UGGAUU AG UGGGAUUGGA      UGAG   GAA UU  A U
  ||||| |||| ||||| ||| |||  ||  |||||| || ||||||||||      ||||   ||| ||  | U
  UCCCG ACAA CCAAU GAG GUU  GU  ACCUAA UC ACUCUAACCU      ACUC   CUU GA  U A
AA     U    A     C   A   AG  AC      C  -          ------    AAA   A  GU U
Stem-loop sequence AAGGGCUUGUUCGGUUAUUUCCAAAACACAUGGAUUAGAUGGGAUUGGAAAAAAUUGAGAAGAAGUUUGACUUAUUUGAGAUUCAAACUCAUCCAAUCUCACUCAAUCCACAUGGAUUGAGAGCUAACCAAACAUGCCCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT018247.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=|||||||||||||||||||
targets:485   UUGGGAAUAACCGAACAAGCCCUU   508

0.0 Zea mays clone EL01N0563E06.c mRNA sequence NA coding protein psRNATarget
NM_001174684.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=|||||||||||||||||||
targets:1316   UUGGGAAUAACCGAACAAGCCCUU   1339

0.0 Zea mays Elongation factor G-1 mitochondrial (pco134899), mRNA NA coding protein psRNATarget
BT062563.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=|||||||||||||||||||
targets:1316   UUGGGAAUAACCGAACAAGCCCUU   1339

0.0 Zea mays full-length cDNA clone ZM_BFb0314E20 mRNA, complete cds NA coding protein psRNATarget
BT066364.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=|||||||||||||||||||
targets:1546   UUGGGAAUAACCGAACAAGCCCUU   1569

0.0 Zea mays full-length cDNA clone ZM_BFc0009H06 mRNA, complete cds NA coding protein psRNATarget
NM_001175812.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=|||||||||||||||||||
targets:1546   UUGGGAAUAACCGAACAAGCCCUU   1569

0.0 Zea mays uncharacterized LOC100383146 (LOC100383146), mRNA NA coding protein psRNATarget
EU964623.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=|||||||||||||||||||
targets:1540   UUGGGAAUAACCGAACAAGCCCUU   1563

0.0 Zea mays clone 280415 sorting nexin 1 mRNA, complete cds NA coding protein psRNATarget
XM_020539702.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=|||||||||||||||||||
targets:2579   UUGGGAAUAACCGAACAAGCCCUU   2602

0.0 PREDICTED: Zea mays receptor kinase-like protein Xa21 (LOC103628995), mRNA NA coding protein psRNATarget
XM_008645434.2
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=|||||||||||||||||||
targets:2559   UUGGGAAUAACCGAACAAGCCCUU   2582

0.0 PREDICTED: Zea mays Elongation factor G-1 mitochondrial (pco134899), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676887.2
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=|||||||||||||||||||
targets:2668   UUGGGAAUAACCGAACAAGCCCUU   2691

0.0 PREDICTED: Zea mays lectin-like receptor kinase 7 (LOC100281599), transcript variant X1, mRNA NA coding protein psRNATarget
BT064472.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||||||||||||||||||||||*
targets:1445   UUGGAAAUAACCGAACAAGCCCUA   1468

1.0 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
BT040193.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||||||||||||||||||||||*
targets:1489   UUGGAAAUAACCGAACAAGCCCUA   1512

1.0 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
AY105910.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||||||||||||||||||||||*
targets:1507   UUGGAAAUAACCGAACAAGCCCUA   1530

1.0 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
NM_001148011.2
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||||||||||||||||||||||*
targets:1521   UUGGAAAUAACCGAACAAGCCCUA   1544

1.0 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
BT041454.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||||||||||||||||||||||*
targets:1521   UUGGAAAUAACCGAACAAGCCCUA   1544

1.0 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
JB166347.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||||||*
targets:120   UUGGGAAUAACCGAACAAGCCCUA   143

1.0 Sequence 4011 from Patent EP2559767 NA coding protein psRNATarget
HI405886.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||||||*
targets:120   UUGGGAAUAACCGAACAAGCCCUA   143

1.0 Sequence 4011 from Patent EP2074227 NA coding protein psRNATarget
LQ238016.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||||||*
targets:120   UUGGGAAUAACCGAACAAGCCCUA   143

1.0 Sequence 4011 from Patent EP2985353 NA coding protein psRNATarget
EU942632.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||||||*
targets:283   UUGGGAAUAACCGAACAAGCCCUA   306

1.0 Zea mays clone 1525411 mRNA sequence NA coding protein psRNATarget
EU968099.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||||||*
targets:250   UUGGGAAUAACCGAACAAGCCCUA   273

1.0 Zea mays clone 314232 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149687.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||||||*
targets:761   UUGGGAAUAACCGAACAAGCCCUA   784

1.0 Zea mays uncharacterized LOC100275644 (LOC100275644), mRNA NA coding protein psRNATarget
EU957313.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||||||*
targets:761   UUGGGAAUAACCGAACAAGCCCUA   784

1.0 Zea mays clone 1588341 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001291617.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||||||*
targets:794   UUGGGAAUAACCGAACAAGCCCUC   817

1.0 Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA NA coding protein psRNATarget
BT068211.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||||||*
targets:794   UUGGGAAUAACCGAACAAGCCCUC   817

1.0 Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds NA coding protein psRNATarget
EU963259.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||||||*
targets:1037   UUGGGAAUAACCGAACAAGCCCUC   1060

1.0 Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds NA coding protein psRNATarget
XM_008669845.2
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||||||*
targets:1823   UUGGGAAUAACCGAACAAGCCCUG   1846

1.0 PREDICTED: Zea mays BcpLH protein (cl15365_1), transcript variant X1, mRNA NA coding protein psRNATarget
EU970939.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||||||*
targets:2130   UUGGGAAUAACCGAACAAGCCCUA   2153

1.0 Zea mays clone 354307 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, mRNA, complete cds NA coding protein psRNATarget
XM_020543938.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||||||*
targets:313   UUGGGAAUAACCGAACAAGCCCUA   336

1.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020543937.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||||||*
targets:313   UUGGGAAUAACCGAACAAGCCCUA   336

1.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020543936.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||||||*
targets:313   UUGGGAAUAACCGAACAAGCCCUA   336

1.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020543935.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||||||*
targets:313   UUGGGAAUAACCGAACAAGCCCUA   336

1.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001348011.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*||||||||||||||||||||
targets:469   UUGAAAAUAACCGAACAAGCCCUU   492

0.0 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
EU972046.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*||||||||||||||||||||
targets:808   UUGAAAAUAACCGAACAAGCCCUU   831

0.0 Zea mays clone 373861 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001147267.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||||||||||||||||||*||||
targets:1566   UUGGAAAUAACCGAACAAGGCCUU   1589

1.5 Zea mays UDP-glycosyltransferase 91A1 (gpm263), mRNA NA coding protein psRNATarget
BT039499.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||||||||||||||||||*||||
targets:1566   UUGGAAAUAACCGAACAAGGCCUU   1589

1.5 Zea mays full-length cDNA clone ZM_BFc0016E06 mRNA, complete cds NA coding protein psRNATarget
BT055069.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*||||||||||||||||||||
targets:1000   UUGAAAAUAACCGAACAAGCCCUU   1023

0.0 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
XM_008654469.2
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*||||||||||||||||||||
targets:3144   UUGAAAAUAACCGAACAAGCCCUU   3167

0.0 PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA NA coding protein psRNATarget
XM_008680349.2
ncRNA:24   AACCUU-UAUUGGCUUGUUCGGGAA   1
  ||||=|-||||||||||||||||||
targets:1993   UUGGGAUAUAACCGAACAAGCCCUU   2017

2.0 PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA NA coding protein psRNATarget
BT068791.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||=|||*
targets:1370   UUGGGAAUAACCGAACAAGUCCUA   1393

2.5 Zea mays full-length cDNA clone ZM_BFb0382D13 mRNA, complete cds NA coding protein psRNATarget
AY111036.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||*||||
targets:200   UUGGGAAUAACCGAACAAGGCCUU   223

1.5 Zea mays CL1582_4 mRNA sequence NA coding protein psRNATarget
BT070056.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||*||||
targets:866   UUGGGAAUAACCGAACAAGACCUU   889

1.5 Zea mays full-length cDNA clone ZM_BFb0374H10 mRNA, complete cds NA coding protein psRNATarget
AY103687.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||*||||
targets:1177   UUGGGAAUAACCGAACAAGACCUU   1200

1.5 Zea mays PCO106710 mRNA sequence NA coding protein psRNATarget
BT018592.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||*||||||||||||
targets:1122   UUGGGAAUAACGGAACAAGCCCUU   1145

1.5 Zea mays clone EL01N0447E06.d mRNA sequence NA coding protein psRNATarget
BT086570.2
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||*||||
targets:241   UUGGGAAUAACCGAACAAGGCCUU   264

1.5 Zea mays full-length cDNA clone ZM_BFc0184M19 mRNA, complete cds NA coding protein psRNATarget
AY109413.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||*||||
targets:1673   UUGGGAAUAACCGAACAAGGCCUU   1696

1.5 Zea mays CL2362_1 mRNA sequence NA coding protein psRNATarget
XM_008658770.2
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||*|=|||||||||||||||||||
targets:2876   UUAGGAAUAACCGAACAAGCCCUU   2899

0.0 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658769.2
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||*|=|||||||||||||||||||
targets:2885   UUAGGAAUAACCGAACAAGCCCUU   2908

0.0 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X1, mRNA NA coding protein psRNATarget
EZ092886.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||||||*
targets:92   UUGAAAAUAACCGAACAAGCCCUA   115

1.0 TSA: Zea mays contig28535, mRNA sequence NA coding protein psRNATarget
BT064935.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||||||*
targets:860   UUGAAAAUAACCGAACAAGCCCUC   883

1.0 Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds NA coding protein psRNATarget
BT062922.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||||||*
targets:922   UUGAAAAUAACCGAACAAGCCCUG   945

1.0 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
EU959055.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||||||*
targets:870   UUGAAAAUAACCGAACAAGCCCUG   893

1.0 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
EU959258.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||||||*
targets:868   UUGAAAAUAACCGAACAAGCCCUG   891

1.0 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959053.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||||||*
targets:868   UUGAAAAUAACCGAACAAGCCCUG   891

1.0 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959345.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||||||*
targets:869   UUGAAAAUAACCGAACAAGCCCUG   892

1.0 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
NM_001156482.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||||||*
targets:912   UUGAAAAUAACCGAACAAGCCCUC   935

1.0 Zea mays threonine endopeptidase (LOC100283581), mRNA NA coding protein psRNATarget
EU965203.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||||||*
targets:912   UUGAAAAUAACCGAACAAGCCCUC   935

1.0 Zea mays clone 284456 threonine endopeptidase mRNA, complete cds NA coding protein psRNATarget
XM_008666525.2
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||||||*
targets:941   UUGAAAAUAACCGAACAAGCCCUG   964

1.0 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||||||*
targets:1071   UUGAAAAUAACCGAACAAGCCCUA   1094

1.0 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||||||*
targets:1184   UUGAAAAUAACCGAACAAGCCCUA   1207

1.0 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
BT055467.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||||||*
targets:1109   UUGAAAAUAACCGAACAAGCCCUA   1132

1.0 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
BT055467.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||||||*
targets:1222   UUGAAAAUAACCGAACAAGCCCUA   1245

1.0 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
XM_020545207.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||||||*
targets:46   UUGAAAAUAACCGAACAAGCCCUA   69

1.0 PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA NA coding protein psRNATarget
XM_008658331.2
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||||||*
targets:1722   UUGAAAAUAACCGAACAAGCCCUG   1745

1.0 PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||||||*
targets:2004   UUGAAAAUAACCGAACAAGCCCUA   2027

1.0 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||||||*
targets:2004   UUGAAAAUAACCGAACAAGCCCUA   2027

1.0 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
EZ062569.1
ncRNA:22   CCUUUAUUGGCUUGUUCGGGAA   1
  |||||||||||||||||||||*
targets:1   GGAAAUAACCGAACAAGCCCUC   22

1.0 TSA: Zea mays contig63691, mRNA sequence NA coding protein psRNATarget
EZ113075.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*=||||||=||||||||||||
targets:10   UUGAGAAUAACUGAACAAGCCCUU   33

1.5 TSA: Zea mays contig48736, mRNA sequence NA coding protein psRNATarget
LQ241774.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|*|=|||||||||||||||||||
targets:122   AUAGGAAUAACCGAACAAGCCCUU   145

0.0 Sequence 7769 from Patent EP2985353 NA coding protein psRNATarget
HI409644.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|*|=|||||||||||||||||||
targets:122   AUAGGAAUAACCGAACAAGCCCUU   145

0.0 Sequence 7769 from Patent EP2074227 NA coding protein psRNATarget
JB170105.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|*|=|||||||||||||||||||
targets:122   AUAGGAAUAACCGAACAAGCCCUU   145

0.0 Sequence 7769 from Patent EP2559767 NA coding protein psRNATarget
JB163547.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|||=||||||||||||||*||||
targets:121   AUGGGAAUAACCGAACAAGGCCUU   144

1.5 Sequence 1211 from Patent EP2559767 NA coding protein psRNATarget
HI403086.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|||=||||||||||||||*||||
targets:121   AUGGGAAUAACCGAACAAGGCCUU   144

1.5 Sequence 1211 from Patent EP2074227 NA coding protein psRNATarget
LQ235216.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|||=||||||||||||||*||||
targets:121   AUGGGAAUAACCGAACAAGGCCUU   144

1.5 Sequence 1211 from Patent EP2985353 NA coding protein psRNATarget
HI402987.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||*|||*
targets:126   UUGGGAAUAACCGAACAAGGCCUA   149

2.5 Sequence 1112 from Patent EP2074227 NA coding protein psRNATarget
LQ235117.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||*|||*
targets:126   UUGGGAAUAACCGAACAAGGCCUA   149

2.5 Sequence 1112 from Patent EP2985353 NA coding protein psRNATarget
JB163448.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=||||||||||||||*|||*
targets:126   UUGGGAAUAACCGAACAAGGCCUA   149

2.5 Sequence 1112 from Patent EP2559767 NA coding protein psRNATarget
EZ110342.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||-|||||||||||||||||||*
targets:37   UUG-AAAUAACCGAACAAGCCCUA   59

1.0 TSA: Zea mays contig46002, mRNA sequence NA coding protein psRNATarget
XM_020551688.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|||=||||||||||||||*||||
targets:2520   AUGGGAAUAACCGAACAAGGCCUU   2543

1.5 PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674543.2
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|*|=|||||||||||||||||||
targets:2524   AUAGGAAUAACCGAACAAGCCCUU   2547

0.0 PREDICTED: Zea mays Peptidase M28 family protein (cl4954_1), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020550022.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||*|=||||||||||||||||||*
targets:3711   UUAGGAAUAACCGAACAAGCCCUA   3734

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020550024.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||*|=||||||||||||||||||*
targets:3735   UUAGGAAUAACCGAACAAGCCCUA   3758

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020550021.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||*|=||||||||||||||||||*
targets:3789   UUAGGAAUAACCGAACAAGCCCUA   3812

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020550020.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||*|=||||||||||||||||||*
targets:3783   UUAGGAAUAACCGAACAAGCCCUA   3806

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020550017.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||*|=||||||||||||||||||*
targets:3791   UUAGGAAUAACCGAACAAGCCCUA   3814

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020550019.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||*|=||||||||||||||||||*
targets:3778   UUAGGAAUAACCGAACAAGCCCUA   3801

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020550016.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||*|=||||||||||||||||||*
targets:3853   UUAGGAAUAACCGAACAAGCCCUA   3876

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550018.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||*|=||||||||||||||||||*
targets:4177   UUAGGAAUAACCGAACAAGCCCUA   4200

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020550015.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||*|=||||||||||||||||||*
targets:4273   UUAGGAAUAACCGAACAAGCCCUA   4296

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020539455.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|*|=|||||||||||||||||||
targets:304   AUAGGAAUAACCGAACAAGCCCUU   327

0.0 PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008679798.2
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*|||||||||||||||*||||
targets:168   UUGUAAAUAACCGAACAAGACCUU   191

1.5 PREDICTED: Zea mays receptor-like protein kinase HSL1 (LOC103652818), transcript variant X2, mRNA NA coding protein psRNATarget
JB166339.1
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:118   UUGAGAGCUAACCGAACAAGCCCUU   142

2.0 Sequence 4003 from Patent EP2559767 NA coding protein psRNATarget
LQ238008.1
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:118   UUGAGAGCUAACCGAACAAGCCCUU   142

2.0 Sequence 4003 from Patent EP2985353 NA coding protein psRNATarget
HI405878.1
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:118   UUGAGAGCUAACCGAACAAGCCCUU   142

2.0 Sequence 4003 from Patent EP2074227 NA coding protein psRNATarget
JB163466.1
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:125   UUGAGAGCUAACCGAACAAGCCCUU   149

2.0 Sequence 1130 from Patent EP2559767 NA coding protein psRNATarget
LQ235135.1
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:125   UUGAGAGCUAACCGAACAAGCCCUU   149

2.0 Sequence 1130 from Patent EP2985353 NA coding protein psRNATarget
HI403090.1
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:125   UUGAGAGCUAACCGAACAAGCCCUU   149

2.0 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
JB163551.1
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:125   UUGAGAGCUAACCGAACAAGCCCUU   149

2.0 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
HI403005.1
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:125   UUGAGAGCUAACCGAACAAGCCCUU   149

2.0 Sequence 1130 from Patent EP2074227 NA coding protein psRNATarget
LQ235220.1
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:125   UUGAGAGCUAACCGAACAAGCCCUU   149

2.0 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
AY103719.1
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:905   UUGAGAGCUAACCGAACAAGCCCUU   929

2.0 Zea mays PCO137008 mRNA sequence NA coding protein psRNATarget
BT043378.1
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:1493   UUGAGAGCUAACCGAACAAGCCCUU   1517

2.0 Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds NA coding protein psRNATarget
NM_001148918.1
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:1493   UUGAGAGCUAACCGAACAAGCCCUU   1517

2.0 Zea mays nodulation homolog 1 (znod1), mRNA NA coding protein psRNATarget
XM_020553538.1
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:1913   UUGAGAGCUAACCGAACAAGCCCUU   1937

2.0 PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645867.2
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:1979   UUGAGAGCUAACCGAACAAGCCCUU   2003

2.0 PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008658561.2
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*||||||||||||||||||**
targets:325   UUGAAAAUAACCGAACAAGCCCGA   348

2.5 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
XM_020541449.1
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:2827   UUGAGAGCUAACCGAACAAGCCCUU   2851

2.0 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541448.1
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:2931   UUGAGAGCUAACCGAACAAGCCCUU   2955

2.0 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:1108   UUGAGAGCUAACCGAACAAGCCCUU   1132

2.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:1226   UUGAGAGCUAACCGAACAAGCCCUU   1250

2.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674024.2
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:3869   UUGAGAGCUAACCGAACAAGCCCUU   3893

2.0 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008674023.2
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:3883   UUGAGAGCUAACCGAACAAGCCCUU   3907

2.0 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674025.2
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:4001   UUGAGAGCUAACCGAACAAGCCCUU   4025

2.0 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008674021.2
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:4016   UUGAGAGCUAACCGAACAAGCCCUU   4040

2.0 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||||||||||||||||
targets:1226   UUGAGAGCUAACCGAACAAGCCCUU   1250

2.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001143004.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||*|||||||=||||||||*||||
targets:1434   UUUGAAAUAAUCGAACAAGACCUU   1457

2.5 Zea mays Sas10/Utp3/C1D family (pco144488), mRNA NA coding protein psRNATarget
BT037007.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||*|||||||=||||||||*||||
targets:1434   UUUGAAAUAAUCGAACAAGACCUU   1457

2.5 Zea mays full-length cDNA clone ZM_BFb0151F19 mRNA, complete cds NA coding protein psRNATarget
EU962948.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=|||||*||||||||*||||
targets:1499   UUGGGAAUAAGCGAACAAGGCCUU   1522

2.5 Zea mays clone 246807 pyruvate dehydrogenase E1 component alpha subunit mRNA, complete cds NA coding protein psRNATarget
EU966790.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=|||||*||||||||*||||
targets:1499   UUGGGAAUAAGCGAACAAGGCCUU   1522

2.5 Zea mays clone 297432 pyruvate dehydrogenase E1 component alpha subunit mRNA, complete cds NA coding protein psRNATarget
EU966290.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=|||||*||||||||*||||
targets:1543   UUGGGAAUAAGCGAACAAGGCCUU   1566

2.5 Zea mays clone 293206 pyruvate dehydrogenase E1 component alpha subunit mRNA, complete cds NA coding protein psRNATarget
NM_001156787.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=|||||*||||||||*||||
targets:1543   UUGGGAAUAAGCGAACAAGGCCUU   1566

2.5 Zea mays pyruvate dehydrogenase E1 component alpha subunit (LOC100283889), mRNA NA coding protein psRNATarget
AY103588.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||||=|||||*||||||||*||||
targets:1517   UUGGGAAUAAGCGAACAAGGCCUU   1540

2.5 Zea mays PCO114222 mRNA sequence NA coding protein psRNATarget
BT018572.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  ||*|=||||||||||||||*||||
targets:1865   UUAGGAAUAACCGAACAAGGCCUU   1888

1.5 Zea mays clone EL01N0443D02.d mRNA sequence NA coding protein psRNATarget
XM_020538542.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  |||*=|||||||*|||||||||||
targets:85   UUGAGAAUAACCAAACAAGCCCUU   108

1.5 PREDICTED: Zea mays uncharacterized LOC103628650 (LOC103628650), transcript variant X2, mRNA NA coding protein psRNATarget
EZ080456.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|*||||||||||||||||=|||*
targets:14   AUAGAAAUAACCGAACAAGUCCUA   37

2.5 TSA: Zea mays contig16095, mRNA sequence NA coding protein psRNATarget
EZ074510.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|||=||||||||||||||*|||*
targets:71   AUGGGAAUAACCGAACAAGACCUA   94

2.5 TSA: Zea mays contig10147, mRNA sequence NA coding protein psRNATarget
HI403070.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|||=||||||||||||||*|||*
targets:114   AUGGGAAUAACCGAACAAGGCCUG   137

2.5 Sequence 1195 from Patent EP2074227 NA coding protein psRNATarget
LQ235200.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|||=||||||||||||||*|||*
targets:114   AUGGGAAUAACCGAACAAGGCCUG   137

2.5 Sequence 1195 from Patent EP2985353 NA coding protein psRNATarget
JB163531.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|||=||||||||||||||*|||*
targets:114   AUGGGAAUAACCGAACAAGGCCUG   137

2.5 Sequence 1195 from Patent EP2559767 NA coding protein psRNATarget
JB163553.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|||=||||||||||||||*|||*
targets:126   AUGGGAAUAACCGAACAAGGCCUA   149

2.5 Sequence 1217 from Patent EP2559767 NA coding protein psRNATarget
HI403092.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|||=||||||||||||||*|||*
targets:126   AUGGGAAUAACCGAACAAGGCCUA   149

2.5 Sequence 1217 from Patent EP2074227 NA coding protein psRNATarget
LQ235222.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|||=||||||||||||||*|||*
targets:126   AUGGGAAUAACCGAACAAGGCCUA   149

2.5 Sequence 1217 from Patent EP2985353 NA coding protein psRNATarget
XM_008667120.2
ncRNA:24   AAC-CUUUAUUGGCUUGUUCGGGAA   1
  |||-||=*|||=|||||||||||||
targets:975   UUGAGAGCUAAUCGAACAAGCCCUU   999

3.0 PREDICTED: Zea mays uncharacterized LOC100501429 (LOC100501429), mRNA NA coding protein psRNATarget
BT084790.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|||=||||||||||||||*|||*
targets:1134   AUGGGAAUAACCGAACAAGACCUA   1157

2.5 Zea mays full-length cDNA clone ZM_BFb0181D14 mRNA, complete cds NA coding protein psRNATarget
EU960091.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|*|=||||||||||||||||||*
targets:1191   GUAGGAAUAACCGAACAAGCCCUA   1214

1.0 Zea mays clone 221636 mRNA sequence NA coding protein psRNATarget
NM_001175804.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|||=||||||||||||||*|||*
targets:2973   AUGGGAAUAACCGAACAAGACCUA   2996

2.5 Zea mays putative ARF GTPase activating domain protein with ankyrin repeat-containing protein (LOC100383138), mRNA NA coding protein psRNATarget
BT066344.1
ncRNA:24   AACCUUUAUUGGCUUGUUCGGGAA   1
  *|||=||||||||||||||*|||*
targets:2973   AUGGGAAUAACCGAACAAGACCUA   2996

2.5 Zea mays full-length cDNA clone ZM_BFb0346C18 mRNA, complete cds NA coding protein psRNATarget