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BaseInfo

ncRNA ID	novel_zma_miR4140
Species	Zea mays
Class	miRNA
Genome position	Chr8:146780974-146781082 [-]
Reference genome	RefGen_v4
Source	SRR2287160
Length	24
Mature sequence(if miRNA)	1 - ACUAAAGUGGAAUAAAUUAGAGGG - 24
Stem-loop(if miRNA)	--   CAU                 UA       CA              UAAC   CUC   UUUAUUCCACUUUAGUC  UAAAUUG  AAAUAUGGAAACUA    U   |||   |||||||||||||||||  |||||||  ||||||||||||||    U   GAG   AAAUAAGGUGAAAUCAG  AUUUAAC  UUUAUACCUUUGAU    U GG   AUU                 UG       AG              UUUA
Stem-loop sequence	CUCCAUUUUAUUCCACUUUAGUCUAUAAAUUGCAAAAUAUGGAAACUAUAACUUUAUUUUAGUUUCCAUAUUUGACAAUUUAGUGACUAAAGUGGAAUAAAUUAGAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552869.1	ncRNA:24   GGGAGAUUAAAUAAGGUGAAAUCA   1   |||||*|||||||||||||||||| targets:1662   CCCUCCAAUUUAUUCCACUUUAGU   1685 Target Full Sequence	1.0	PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550132.1	ncRNA:24   GGGAGAUUAAAUAAGGUGAAAUCA   1   |||||*|||||||||||||||||| targets:23   CCCUCCAAUUUAUUCCACUUUAGU   46 Target Full Sequence	1.0	PREDICTED: Zea mays putrescine hydroxycinnamoyltransferase 1-like (LOC103649816), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945607.1	ncRNA:24   GGGAGAUUAAAUAAGGUGAAAUCA   1   |||||*|||||||||||=|||||| targets:146   CCCUCCAAUUUAUUCCAUUUUAGU   169 Target Full Sequence	2.5	Zea mays clone 279279 mRNA sequence	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:24   GGGAGAUUAAAUAAGGUGAAAUCA   1   |||||*|*|||||||||||||||| targets:2992   CCCUCCAUUUUAUUCCACUUUAGU   3015 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   GGGAGAUUAAAUAAGGUGAAAUCA   1   |||||*|*|||||||||||||||| targets:2603   CCCUCCAUUUUAUUCCACUUUAGU   2626 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:24   GGGAGAUUAAAUAAGGUGAAAUCA   1   |||||*|*|||||||||||||||| targets:485   CCCUCCAUUUUAUUCCACUUUAGU   508 Target Full Sequence	2.0	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020549268.1	ncRNA:24   GGGAGAUUAAAUAAGGUGAAAUCA   1   ==*||*|||||||||||||||||| targets:1145   UUAUCCAAUUUAUUCCACUUUAGU   1168 Target Full Sequence	1.0	PREDICTED: Zea mays ethylene-responsive transcription factor ERF039 (LOC100283619), mRNA	NA	coding protein	psRNATarget
XM_008660555.2	ncRNA:24   GGGAGAUUAAAUAAGGUGAAAUCA   1   ||||**|*|||||||||||||||| targets:1920   CCCUACAUUUUAUUCCACUUUAGU   1943 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163832.1	ncRNA:21   AGAUUAAAUAAGGUGAAAUCA   1   ||||*|||||||||=|||||| targets:1   UCUAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1496 from Patent EP2559767	NA	coding protein	psRNATarget
HI403398.1	ncRNA:21   AGAUUAAAUAAGGUGAAAUCA   1   ||||*|||||||||=|||||| targets:1   UCUACUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1523 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235501.1	ncRNA:21   AGAUUAAAUAAGGUGAAAUCA   1   ||||*|||||||||=|||||| targets:1   UCUAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1496 from Patent EP2985353	NA	coding protein	psRNATarget
JB163859.1	ncRNA:21   AGAUUAAAUAAGGUGAAAUCA   1   ||||*|||||||||=|||||| targets:1   UCUACUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1523 from Patent EP2559767	NA	coding protein	psRNATarget
HI403371.1	ncRNA:21   AGAUUAAAUAAGGUGAAAUCA   1   ||||*|||||||||=|||||| targets:1   UCUAUUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1496 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235528.1	ncRNA:21   AGAUUAAAUAAGGUGAAAUCA   1   ||||*|||||||||=|||||| targets:1   UCUACUUUAUUCCAUUUUAGU   21 Target Full Sequence	2.5	Sequence 1523 from Patent EP2985353	NA	coding protein	psRNATarget
BT066057.2	ncRNA:24   GGGAGAUUAAAUAAGGUGAAAUCA   1   ***|*|=||||||||||=|||||| targets:861   AAAUAUGAUUUAUUCCAUUUUAGU   884 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0211I17 mRNA, complete cds	NA	coding protein	psRNATarget