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BaseInfo

ncRNA ID	novel_zma_miR4137
Species	Zea mays
Class	miRNA
Genome position	Chr8:157629489-157629603 [-]
Reference genome	RefGen_v4
Source	SRR2287160
Length	24
Mature sequence(if miRNA)	1 - AAAAUGGAAUAAAAUGUAGGGGCU - 24
Stem-loop(if miRNA)	--     U           U       -   U      U                      UCCCU CAUUUUAUUCC UUUUAGU CUA AAAUUG UAAAUAUAGAAACUAAAAUA   ||||| ||||||||||| ||||||| ||| |||||| |||||||||||||||||||A   GGGGA GUAAAAUAAGG AAAAUCA GGU UUUAAU GUUUAUAUCUUUGAUUUUGA UC     U           U       A   -      U
Stem-loop sequence	UCCCUUCAUUUUAUUCCUUUUUAGUCUAUAAAUUGUUAAAUAUAGAAACUAAAAUAAAGUUUUAGUUUCUAUAUUUGUUAAUUUUGGAACUAAAAUGGAAUAAAAUGUAGGGGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020542840.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||||||||||||||||||| targets:999   AGUCCCUACAUUUUAUUCCAUUUU   1022 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001112512.2	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=|||||||||||||||=||||| targets:1571   AGUCCCUACAUUUUAUUCUAUUUU   1594 Target Full Sequence	1.5	Zea mays Aldose reductase (pco147797a), mRNA	NA	coding protein	psRNATarget
NM_001112512.2	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*||||||||||=||||| targets:1668   AGUCCCUUCAUUUUAUUCUAUUUU   1691 Target Full Sequence	2.5	Zea mays Aldose reductase (pco147797a), mRNA	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=|=||||||||||||||||||| targets:842   AGUCUCUACAUUUUAUUCCAUUUU   865 Target Full Sequence	0.0	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=|=||||||||||||||||||| targets:842   AGUCUCUACAUUUUAUUCCAUUUU   865 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553397.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||==|||||||||||||||||||| targets:579   AGUUCCUACAUUUUAUUCCAUUUU   602 Target Full Sequence	0.0	PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ060524.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=|||||||||||||||=||||| targets:71   AGUCCCUACAUUUUAUUCUAUUUU   94 Target Full Sequence	1.5	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget
XM_008667360.2	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=|||||=|||||||||=||||| targets:1068   AGUCCCUAUAUUUUAUUCUAUUUU   1091 Target Full Sequence	2.5	PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA	NA	coding protein	psRNATarget
LQ235225.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||||||||||||=|||||* targets:31   AGUCCCUACAUUUUAUUUCAUUUA   54 Target Full Sequence	2.5	Sequence 1220 from Patent EP2985353	NA	coding protein	psRNATarget
JB163556.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||||||||||||=|||||* targets:31   AGUCCCUACAUUUUAUUUCAUUUA   54 Target Full Sequence	2.5	Sequence 1220 from Patent EP2559767	NA	coding protein	psRNATarget
HI403095.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||||||||||||=|||||* targets:31   AGUCCCUACAUUUUAUUUCAUUUA   54 Target Full Sequence	2.5	Sequence 1220 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001174830.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||||||| targets:2099   AGUCCCUUCAUUUUAUUCCAUUUU   2122 Target Full Sequence	1.0	Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA	NA	coding protein	psRNATarget
BT063047.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||||||| targets:2099   AGUCCCUUCAUUUUAUUCCAUUUU   2122 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660555.2	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=|||||||||||||||||*||| targets:1917   AGUCCCUACAUUUUAUUCCACUUU   1940 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||||||| targets:294   AGUCCCUCCAUUUUAUUCCAUUUU   317 Target Full Sequence	1.0	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=|||**|||||||||||||||| targets:170   AGUCCCAUCAUUUUAUUCCAUUUU   193 Target Full Sequence	2.0	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
EZ052166.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=|||||*||||||||||||||| targets:779   AGUCCCUAGAUUUUAUUCCAUUUU   802 Target Full Sequence	1.0	TSA: Zea mays contig53286, mRNA sequence	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||||||| targets:169   AGUCCCUCCAUUUUAUUCCAUUUU   192 Target Full Sequence	1.0	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=|||**|||||||||||||||| targets:45   AGUCCCAUCAUUUUAUUCCAUUUU   68 Target Full Sequence	2.0	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||||||| targets:169   AGUCCCUCCAUUUUAUUCCAUUUU   192 Target Full Sequence	1.0	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=|||**|||||||||||||||| targets:45   AGUCCCAUCAUUUUAUUCCAUUUU   68 Target Full Sequence	2.0	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||||||| targets:169   AGUCCCUCCAUUUUAUUCCAUUUU   192 Target Full Sequence	1.0	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=|||**|||||||||||||||| targets:45   AGUCCCAUCAUUUUAUUCCAUUUU   68 Target Full Sequence	2.0	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
HI403052.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||||||| targets:29   AGUCCCUUCAUUUUAUUCCAUUUU   52 Target Full Sequence	1.0	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||||||| targets:29   AGUCCCUUCAUUUUAUUCCAUUUU   52 Target Full Sequence	1.0	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
JB163513.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||||||| targets:29   AGUCCCUUCAUUUUAUUCCAUUUU   52 Target Full Sequence	1.0	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
HI402994.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=|||||||*||||||||||||| targets:29   AGUCCCUACACUUUAUUCCAUUUU   52 Target Full Sequence	1.0	Sequence 1119 from Patent EP2074227	NA	coding protein	psRNATarget
JB163455.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=|||||||*||||||||||||| targets:29   AGUCCCUACACUUUAUUCCAUUUU   52 Target Full Sequence	1.0	Sequence 1119 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235124.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=|||||||*||||||||||||| targets:29   AGUCCCUACACUUUAUUCCAUUUU   52 Target Full Sequence	1.0	Sequence 1119 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||||||| targets:78   AGUCCCUCCAUUUUAUUCCAUUUU   101 Target Full Sequence	1.0	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
HI406419.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||||||| targets:78   AGUCCCUCCAUUUUAUUCCAUUUU   101 Target Full Sequence	1.0	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
JB166880.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||||||| targets:78   AGUCCCUCCAUUUUAUUCCAUUUU   101 Target Full Sequence	1.0	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=|=||*|||||||||||||||| targets:2151   AGUCUCUCCAUUUUAUUCCAUUUU   2174 Target Full Sequence	1.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU957896.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||=||||||||||||||*||| targets:1270   AGUCCUUACAUUUUAUUCCACUUU   1293 Target Full Sequence	2.5	Zea mays clone 1630391 mRNA sequence	NA	coding protein	psRNATarget
XM_008680551.2	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*||||||||||=||||| targets:838   AGUCCCUUCAUUUUAUUCUAUUUU   861 Target Full Sequence	2.5	PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403041.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*||||||=||||||||| targets:29   AGUCCCUUCAUUUUGUUCCAUUUU   52 Target Full Sequence	2.5	Sequence 1166 from Patent EP2074227	NA	coding protein	psRNATarget
JB163502.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*||||||=||||||||| targets:29   AGUCCCUUCAUUUUGUUCCAUUUU   52 Target Full Sequence	2.5	Sequence 1166 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235185.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*||||||||||=||||| targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52 Target Full Sequence	2.5	Sequence 1180 from Patent EP2985353	NA	coding protein	psRNATarget
HI403055.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*||||||||||=||||| targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52 Target Full Sequence	2.5	Sequence 1180 from Patent EP2074227	NA	coding protein	psRNATarget
JB163516.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*||||||||||=||||| targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52 Target Full Sequence	2.5	Sequence 1180 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235171.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*||||||=||||||||| targets:29   AGUCCCUUCAUUUUGUUCCAUUUU   52 Target Full Sequence	2.5	Sequence 1166 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235180.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*||||||||||=||||| targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52 Target Full Sequence	2.5	Sequence 1175 from Patent EP2985353	NA	coding protein	psRNATarget
JB163511.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*||||||||||=||||| targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52 Target Full Sequence	2.5	Sequence 1175 from Patent EP2559767	NA	coding protein	psRNATarget
HI403050.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*||||||||||=||||| targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52 Target Full Sequence	2.5	Sequence 1175 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242410.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||==|||*||||||=||||||||| targets:5   AGUUCCUUCAUUUUGUUCCAUUUU   28 Target Full Sequence	2.5	Sequence 8405 from Patent EP2985353	NA	coding protein	psRNATarget
HI410280.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||==|||*||||||=||||||||| targets:5   AGUUCCUUCAUUUUGUUCCAUUUU   28 Target Full Sequence	2.5	Sequence 8405 from Patent EP2074227	NA	coding protein	psRNATarget
JB170741.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||==|||*||||||=||||||||| targets:5   AGUUCCUUCAUUUUGUUCCAUUUU   28 Target Full Sequence	2.5	Sequence 8405 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*||||||||||||*||| targets:2989   AGUCCCUCCAUUUUAUUCCACUUU   3012 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654984.2	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=|||**|||||||||||||||| targets:2933   AGUCCCAUCAUUUUAUUCCAUUUU   2956 Target Full Sequence	2.0	PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*||||||||||||*||| targets:2600   AGUCCCUCCAUUUUAUUCCACUUU   2623 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*||||||||||||*||| targets:482   AGUCCCUCCAUUUUAUUCCACUUU   505 Target Full Sequence	2.5	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU956227.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||*|||| targets:1269   AGUCCCUUCAUUUUAUUCCUUUUU   1292 Target Full Sequence	2.5	Zea mays clone 1559264 mRNA sequence	NA	coding protein	psRNATarget
XM_008650754.2	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||*|||| targets:1182   AGUCCCUUCAUUUUAUUCCUUUUU   1205 Target Full Sequence	2.5	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008650753.2	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||*|||| targets:1176   AGUCCCUUCAUUUUAUUCCUUUUU   1199 Target Full Sequence	2.5	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650758.2	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||*|||| targets:1173   AGUCCCUUCAUUUUAUUCCUUUUU   1196 Target Full Sequence	2.5	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008650759.2	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||*|||| targets:1164   AGUCCCUUCAUUUUAUUCCUUUUU   1187 Target Full Sequence	2.5	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU942443.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||*|||| targets:492   AGUCCCUUCAUUUUAUUCCUUUUU   515 Target Full Sequence	2.5	Zea mays clone 1501876 mRNA sequence	NA	coding protein	psRNATarget
EU945607.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*||*||||||||||||| targets:143   AGUCCCUCCAAUUUAUUCCAUUUU   166 Target Full Sequence	2.0	Zea mays clone 279279 mRNA sequence	NA	coding protein	psRNATarget
LQ239351.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||*|||| targets:9   AGUCCCUUCAUUUUAUUCCUUUUU   32 Target Full Sequence	2.5	Sequence 5346 from Patent EP2985353	NA	coding protein	psRNATarget
HI407221.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||*|||| targets:9   AGUCCCUUCAUUUUAUUCCUUUUU   32 Target Full Sequence	2.5	Sequence 5346 from Patent EP2074227	NA	coding protein	psRNATarget
JB167682.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=||||*|||||||||||*|||| targets:9   AGUCCCUUCAUUUUAUUCCUUUUU   32 Target Full Sequence	2.5	Sequence 5346 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008657966.2	ncRNA:20   GGAUGUAAAAUAAGGUAAAA   1   ||||||||||||||=||||| targets:1   CCUACAUUUUAUUCUAUUUU   20 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103635535 (LOC103635535), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU967664.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=|=||*||*||||||||||||| targets:1126   AGUCUCUCCACUUUAUUCCAUUUU   1149 Target Full Sequence	2.0	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   ||=|=||*||*||||||||||||| targets:1126   AGUCUCUCCACUUUAUUCCAUUUU   1149 Target Full Sequence	2.0	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
NM_001305845.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   |*=|==|*|||||||||||||||| targets:2084   AAUCUUUCCAUUUUAUUCCAUUUU   2107 Target Full Sequence	2.0	Zea mays uncharacterized LOC542022 (LOC542022), mRNA	NA	coding protein	psRNATarget
EU972680.1	ncRNA:24   UCGGGGAUGUAAAAUAAGGUAAAA   1   *|*==||=|||||||||*|||||| targets:744   CGGUUCUGCAUUUUAUUACAUUUU   767 Target Full Sequence	2.5	Zea mays clone 385839 solute carrier family 2, facilitated glucose transporter member 8 mRNA, complete cds	NA	coding protein	psRNATarget