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BaseInfo

ncRNA ID novel_zma_miR4134
Species Zea mays
Class miRNA
Genome position Chr7:171169599-171169715 [+]
Reference genome RefGen_v4
Source SRR2287160
Length 24
Mature sequence(if miRNA) 94 - AAAUGGAAUAAAAUGAAGAGACUA - 117
Stem-loop(if miRNA) --   C  A         A         UCCA      C            C     C
  GUC CU CAUUUUAUU CAUUUUAGU    AAAUUG UAAAUAUGGAAA UAAAA U
  ||| || ||||||||| |||||||||    |||||| |||||||||||| ||||| C
  CAG GA GUAAAAUAA GUAAAAUCA    UUUAAC GUUUAUAUCUUU AUUUU U
AU   A  A         G         UAUA      A            A     A
Stem-loop sequence GUCCCUACAUUUUAUUACAUUUUAGUUCCAAAAUUGCUAAAUAUGGAAACUAAAACUCUAUUUUAAUUUCUAUAUUUGACAAUUUAUAUACUAAAAUGGAAUAAAAUGAAGAGACUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT066639.1
ncRNA:24   AUCAGAGAAGUAAAAU-AAGGUAAA   1
  ||||||||||||||||-||||||||
targets:1821   UAGUCUCUUCAUUUUAAUUCCAUUU   1845

3.0 Zea mays full-length cDNA clone ZM_BFb0039L20 mRNA, complete cds NA coding protein psRNATarget
NM_001175892.2
ncRNA:24   AUCAGAGAAGUAAAAU-AAGGUAAA   1
  ||||||||||||||||-||||||||
targets:1821   UAGUCUCUUCAUUUUAAUUCCAUUU   1845

3.0 Zea mays F-box/kelch-repeat protein SKIP11 (cl42453_1(521)), mRNA NA coding protein psRNATarget
XM_020545045.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  ||||||||*|||||||||||||||
targets:2150   UAGUCUCUCCAUUUUAUUCCAUUU   2173

1.0 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001174830.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||||||||||||||||||
targets:2098   UAGUCCCUUCAUUUUAUUCCAUUU   2121

1.0 Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA NA coding protein psRNATarget
BT063047.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||||||||||||||||||
targets:2098   UAGUCCCUUCAUUUUAUUCCAUUU   2121

1.0 Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds NA coding protein psRNATarget
NM_001139183.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  ||||||||*|||||||||||||||
targets:841   UAGUCUCUACAUUUUAUUCCAUUU   864

1.0 Zea mays hypothetical protein (LOC100194130), mRNA NA coding protein psRNATarget
BT036582.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  ||||||||*|||||||||||||||
targets:841   UAGUCUCUACAUUUUAUUCCAUUU   864

1.0 Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds NA coding protein psRNATarget
JB163513.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||||||||||||||||||
targets:28   UAGUCCCUUCAUUUUAUUCCAUUU   51

1.0 Sequence 1177 from Patent EP2559767 NA coding protein psRNATarget
HI403052.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||||||||||||||||||
targets:28   UAGUCCCUUCAUUUUAUUCCAUUU   51

1.0 Sequence 1177 from Patent EP2074227 NA coding protein psRNATarget
LQ235182.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||||||||||||||||||
targets:28   UAGUCCCUUCAUUUUAUUCCAUUU   51

1.0 Sequence 1177 from Patent EP2985353 NA coding protein psRNATarget
NM_001112512.2
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*|||||||||||||=||||
targets:1667   UAGUCCCUUCAUUUUAUUCUAUUU   1690

2.5 Zea mays Aldose reductase (pco147797a), mRNA NA coding protein psRNATarget
XM_008680551.2
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*|||||||||||||=||||
targets:837   UAGUCCCUUCAUUUUAUUCUAUUU   860

2.5 PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA NA coding protein psRNATarget
HI403055.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*|||||||||||||=||||
targets:28   UAGUCCCUUCAUUUUAUUCUAUUU   51

2.5 Sequence 1180 from Patent EP2074227 NA coding protein psRNATarget
HI403041.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*|||||||||=||||||||
targets:28   UAGUCCCUUCAUUUUGUUCCAUUU   51

2.5 Sequence 1166 from Patent EP2074227 NA coding protein psRNATarget
JB163502.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*|||||||||=||||||||
targets:28   UAGUCCCUUCAUUUUGUUCCAUUU   51

2.5 Sequence 1166 from Patent EP2559767 NA coding protein psRNATarget
LQ235171.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*|||||||||=||||||||
targets:28   UAGUCCCUUCAUUUUGUUCCAUUU   51

2.5 Sequence 1166 from Patent EP2985353 NA coding protein psRNATarget
JB163516.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*|||||||||||||=||||
targets:28   UAGUCCCUUCAUUUUAUUCUAUUU   51

2.5 Sequence 1180 from Patent EP2559767 NA coding protein psRNATarget
LQ235185.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*|||||||||||||=||||
targets:28   UAGUCCCUUCAUUUUAUUCUAUUU   51

2.5 Sequence 1180 from Patent EP2985353 NA coding protein psRNATarget
LQ235180.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*|||||||||||||=||||
targets:28   UAGUCCCUUCAUUUUAUUCUAUUU   51

2.5 Sequence 1175 from Patent EP2985353 NA coding protein psRNATarget
HI403050.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*|||||||||||||=||||
targets:28   UAGUCCCUUCAUUUUAUUCUAUUU   51

2.5 Sequence 1175 from Patent EP2074227 NA coding protein psRNATarget
JB163511.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*|||||||||||||=||||
targets:28   UAGUCCCUUCAUUUUAUUCUAUUU   51

2.5 Sequence 1175 from Patent EP2559767 NA coding protein psRNATarget
XM_020550478.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*|||||||||||||||||*
targets:2649   UAGUCCCUUCAUUUUAUUCCAUUG   2672

2.0 PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA NA coding protein psRNATarget
BT063820.1
ncRNA:24   AUCAGAGAAGUAAAAU-AAGGUAAA   1
  ||*|||||||||||||-||||||||
targets:1828   UAAUCUCUUCAUUUUAAUUCCAUUU   1852

3.0 Zea mays full-length cDNA clone ZM_BFc0110B23 mRNA, complete cds NA coding protein psRNATarget
NM_001175050.1
ncRNA:24   AUCAGAGAAGUAAAAU-AAGGUAAA   1
  ||*|||||||||||||-||||||||
targets:1828   UAAUCUCUUCAUUUUAAUUCCAUUU   1852

3.0 Zea mays F-box/kelch-repeat protein SKIP11 (LOC100382301), mRNA NA coding protein psRNATarget
EZ064600.1
ncRNA:24   AUCAGAGAAGUAAAAU-AAGGUAAA   1
  ||*|||||||||||||-||||||||
targets:1367   UAAUCUCUUCAUUUUAAUUCCAUUU   1391

3.0 TSA: Zea mays contig00232, mRNA sequence NA coding protein psRNATarget
LQ242410.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  ||||=*|||||||||=||||||||
targets:4   UAGUUCCUUCAUUUUGUUCCAUUU   27

2.5 Sequence 8405 from Patent EP2985353 NA coding protein psRNATarget
HI410280.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  ||||=*|||||||||=||||||||
targets:4   UAGUUCCUUCAUUUUGUUCCAUUU   27

2.5 Sequence 8405 from Patent EP2074227 NA coding protein psRNATarget
JB170741.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  ||||=*|||||||||=||||||||
targets:4   UAGUUCCUUCAUUUUGUUCCAUUU   27

2.5 Sequence 8405 from Patent EP2559767 NA coding protein psRNATarget
XM_008654984.2
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*|*||||||||||||||||
targets:2932   UAGUCCCAUCAUUUUAUUCCAUUU   2955

2.0 PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA NA coding protein psRNATarget
XM_008656457.2
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||||||||||||||*|||
targets:1671   UAGUCCCUUCAUUUUAUUCCUUUU   1694

2.5 PREDICTED: Zea mays programmed cell death protein 2 (LOC103634523), transcript variant X5, mRNA NA coding protein psRNATarget
BT019141.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*|*||||||||||||||||
targets:169   UAGUCCCAUCAUUUUAUUCCAUUU   192

2.0 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
BT019141.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||*|||||||||||||||
targets:293   UAGUCCCUCCAUUUUAUUCCAUUU   316

2.0 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
EU956227.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||||||||||||||*|||
targets:1268   UAGUCCCUUCAUUUUAUUCCUUUU   1291

2.5 Zea mays clone 1559264 mRNA sequence NA coding protein psRNATarget
EU967664.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  ||||||||*||*||||||||||||
targets:1125   UAGUCUCUCCACUUUAUUCCAUUU   1148

2.5 Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds NA coding protein psRNATarget
NM_001112602.2
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  ||||||||*||*||||||||||||
targets:1125   UAGUCUCUCCACUUUAUUCCAUUU   1148

2.5 Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA NA coding protein psRNATarget
XM_020542840.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||*|||||||||||||||
targets:998   UAGUCCCUACAUUUUAUUCCAUUU   1021

2.0 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650754.2
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||||||||||||||*|||
targets:1181   UAGUCCCUUCAUUUUAUUCCUUUU   1204

2.5 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008650753.2
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||||||||||||||*|||
targets:1175   UAGUCCCUUCAUUUUAUUCCUUUU   1198

2.5 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650758.2
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||||||||||||||*|||
targets:1172   UAGUCCCUUCAUUUUAUUCCUUUU   1195

2.5 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008650759.2
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||||||||||||||*|||
targets:1163   UAGUCCCUUCAUUUUAUUCCUUUU   1186

2.5 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X4, mRNA NA coding protein psRNATarget
EU942443.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||||||||||||||*|||
targets:491   UAGUCCCUUCAUUUUAUUCCUUUU   514

2.5 Zea mays clone 1501876 mRNA sequence NA coding protein psRNATarget
HI406713.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*|*||||||||||||||||
targets:44   UAGUCCCAUCAUUUUAUUCCAUUU   67

2.0 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
HI406713.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||*|||||||||||||||
targets:168   UAGUCCCUCCAUUUUAUUCCAUUU   191

2.0 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
LQ238843.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*|*||||||||||||||||
targets:44   UAGUCCCAUCAUUUUAUUCCAUUU   67

2.0 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
LQ238843.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||*|||||||||||||||
targets:168   UAGUCCCUCCAUUUUAUUCCAUUU   191

2.0 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
JB167174.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*|*||||||||||||||||
targets:44   UAGUCCCAUCAUUUUAUUCCAUUU   67

2.0 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
JB167174.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||*|||||||||||||||
targets:168   UAGUCCCUCCAUUUUAUUCCAUUU   191

2.0 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
HI406419.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||*|||||||||||||||
targets:77   UAGUCCCUCCAUUUUAUUCCAUUU   100

2.0 Sequence 4544 from Patent EP2074227 NA coding protein psRNATarget
LQ238549.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||*|||||||||||||||
targets:77   UAGUCCCUCCAUUUUAUUCCAUUU   100

2.0 Sequence 4544 from Patent EP2985353 NA coding protein psRNATarget
JB166880.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||*|||||||||||||||
targets:77   UAGUCCCUCCAUUUUAUUCCAUUU   100

2.0 Sequence 4544 from Patent EP2559767 NA coding protein psRNATarget
LQ239351.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||||||||||||||*|||
targets:8   UAGUCCCUUCAUUUUAUUCCUUUU   31

2.5 Sequence 5346 from Patent EP2985353 NA coding protein psRNATarget
HI407221.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||||||||||||||*|||
targets:8   UAGUCCCUUCAUUUUAUUCCUUUU   31

2.5 Sequence 5346 from Patent EP2074227 NA coding protein psRNATarget
JB167682.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||||||||||||||*|||
targets:8   UAGUCCCUUCAUUUUAUUCCUUUU   31

2.5 Sequence 5346 from Patent EP2559767 NA coding protein psRNATarget
NM_001305845.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  ||*|||=|*|||||||||||||||
targets:2083   UAAUCUUUCCAUUUUAUUCCAUUU   2106

2.0 Zea mays uncharacterized LOC542022 (LOC542022), mRNA NA coding protein psRNATarget
XM_020553397.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  ||||=*||*|||||||||||||||
targets:578   UAGUUCCUACAUUUUAUUCCAUUU   601

2.0 PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA NA coding protein psRNATarget
EZ052038.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  ||||||*|*||||||||||||||*
targets:200   UAGUCUAUCCAUUUUAUUCCAUUC   223

3.0 TSA: Zea mays contig53158, mRNA sequence NA coding protein psRNATarget
BT083561.2
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  ||||||*|*||||||||||||||*
targets:203   UAGUCUAUCCAUUUUAUUCCAUUC   226

3.0 Zea mays full-length cDNA clone ZM_BFb0012F08 mRNA, complete cds NA coding protein psRNATarget
NM_001320812.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  ||-||*||||||||||||=|||||
targets:2400   UA-UCGCUUCAUUUUAUUUCAUUU   2422

2.5 Zea mays Protein HAPLESS 2 (LOC100274016), mRNA NA coding protein psRNATarget
XM_008669344.2
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  ||-||*||||||||||||=|||||
targets:2046   UA-UCGCUUCAUUUUAUUUCAUUU   2068

2.5 PREDICTED: Zea mays Protein HAPLESS 2 (LOC100274016), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001148401.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  ||-||*||||||||||||=|||||
targets:1918   UA-UCGCUUCAUUUUAUUUCAUUU   1940

2.5 Zea mays Protein HAPLESS 2 (LOC100274016), mRNA NA coding protein psRNATarget
BT061735.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  ||-||*||||||||||||=|||||
targets:1918   UA-UCGCUUCAUUUUAUUUCAUUU   1940

2.5 Zea mays full-length cDNA clone ZM_BFb0178N21 mRNA, complete cds NA coding protein psRNATarget
BT069618.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  ||-||*||||||||||||=|||||
targets:1567   UA-UCGCUUCAUUUUAUUUCAUUU   1589

2.5 Zea mays full-length cDNA clone ZM_BFb0195L03 mRNA, complete cds NA coding protein psRNATarget
EU947700.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  ||-||*||||||||||||=|||||
targets:578   UA-UCGCUUCAUUUUAUUUCAUUU   600

2.5 Zea mays clone 353041 mRNA sequence NA coding protein psRNATarget
EZ052166.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |||||*||**||||||||||||||
targets:778   UAGUCCCUAGAUUUUAUUCCAUUU   801

3.0 TSA: Zea mays contig53286, mRNA sequence NA coding protein psRNATarget
EZ058721.1
ncRNA:24   AUCAGAGAAGUAAAAUAAGGUAAA   1
  |**|=|||||*|||||||||=|||
targets:35   UUUUUUCUUCUUUUUAUUCCGUUU   58

2.5 TSA: Zea mays contig59843, mRNA sequence NA coding protein psRNATarget
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