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BaseInfo

ncRNA ID novel_zma_miR4128
Species Zea mays
Class miRNA
Genome position Chr7:64647543-64647599 [+]
Reference genome RefGen_v4
Source SRR2287160;SRR2287161;SRR2287162;SRR2287165;SRR5451004;SRR5451006;SRR1997866;SRR2089698;SRR2089699;SRR2089700;SRR2089701;SRR2089704;SRR2089705;SRR2089707
Length 24
Mature sequence(if miRNA) 1 - GCUCAGCGAACUGUACAUCGGCAA - 24
Stem-loop(if miRNA) --    A     CU    A       CGG
  GCUC GCGAA  GUAC UCGGCAA   C
  |||| |||||  |||| |||||||
  CGGG UGUUU  CAUG AGCCGUU   C
CA    C     UU    -       UCU
Stem-loop sequence GCUCAGCGAACUGUACAUCGGCAACGGCCUCUUUGCCGAGUACUUUUUGUCGGGCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020545810.1
ncRNA:24   AACGGCUACAUGUCAAGCGACUCG   1
  |||||||||||||||||*|||||*
targets:375   UUGCCGAUGUACAGUUCACUGAGA   398

2.5 PREDICTED: Zea mays zinc finger BED domain-containing protein RICESLEEPER 2-like (LOC109943047), mRNA NA coding protein psRNATarget
EZ050721.1
ncRNA:24   AACGGCUACAUGUCAAGCGACUCG   1
  |||=||||||||*||||||||||*
targets:26   UUGUCGAUGUACUGUUCGCUGAGA   49

2.5 TSA: Zea mays contig51841, mRNA sequence NA coding protein psRNATarget
XM_008672232.2
ncRNA:24   AACGGCUACAUGUCAAGCGACUCG   1
  **|=|||*|*=|||||||||||||
targets:3487   AGGUCGAGGCGCAGUUCGCUGAGC   3510

3.0 PREDICTED: Zea mays glutamate receptor 3.4 (LOC103647716), mRNA NA coding protein psRNATarget