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BaseInfo

ncRNA ID novel_zma_miR4127
Species Zea mays
Class miRNA
Genome position Chr7:5212926-5213016 [+]
Reference genome RefGen_v4
Source SRR2287160
Length 24
Mature sequence(if miRNA) 1 - CCCGGGAUUCUGGGAGGAUCGGAG - 24
Stem-loop(if miRNA) ---CCC                C      A       A      UA
      GGGAUUCUGGGAGGAU GGAGGG AUUGAGG GGAAAU  G
      |||||||||||||||| |||||| ||||||| ||||||
      CUCUAGGACUCUCCUA CCUCCC UAACUCC CCUUUA  U
CUGUUC                A      C       C      UU
Stem-loop sequence CCCGGGAUUCUGGGAGGAUCGGAGGGAAUUGAGGAGGAAAUUAGUUUAUUUCCCCCUCAAUCCCCUCCAAUCCUCUCAGGAUCUCCUUGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020540504.1
ncRNA:24   GAGGCUAGGAGGGUCUUAGGGCCC   1
  ||||||||||||||||||||||||
targets:1861   CUCCGAUCCUCCCAGAAUCCCGGG   1884

0.0 PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020540503.1
ncRNA:24   GAGGCUAGGAGGGUCUUAGGGCCC   1
  ||||||||||||||||||||||||
targets:2299   CUCCGAUCCUCCCAGAAUCCCGGG   2322

0.0 PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA NA coding protein psRNATarget