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BaseInfo

ncRNA ID novel_zma_miR4125
Species Zea mays
Class miRNA
Genome position Chr1:124550486-124550540 [-]
Reference genome RefGen_v4
Source SRR1583944;SRR1583941;SRR2647221;SRR1583942
Length 24
Mature sequence(if miRNA) 1 - CUCCUGCCAAGUUAUUGUAUCUGC - 24
Stem-loop(if miRNA) --     UG    ----   U   A   CU
  GGAUG  AUGA    GCA GGA GUU  C
  |||||  ||||    ||| ||| |||  C
  UCUAU  UAUU    CGU CCU CAA  U
CG     GU    GAAC   -   -   AA
Stem-loop sequence GGAUGUGAUGAGCAUGGAAGUUCUCCUAAAACUCCUGCCAAGUUAUUGUAUCUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020552332.1
ncRNA:24   CGUCUAUGUUAUUGAACCGUCCUC   1
  ||||||||*|||||*|||||||||
targets:190   GCAGAUACUAUAACCUGGCAGGAG   213

2.5 PREDICTED: Zea mays uncharacterized LOC109945940 (LOC109945940), mRNA NA coding protein psRNATarget
XM_020542269.1
ncRNA:24   CGUCUAUGUUAUUGAACCGUCCUC   1
  ||=|||||*|||||*|||||||||
targets:184   GCGGAUACUAUAACCUGGCAGGAG   207

2.5 PREDICTED: Zea mays uncharacterized LOC109941395 (LOC109941395), mRNA NA coding protein psRNATarget
XM_020548988.1
ncRNA:24   CGUCUAUGUUAUUGAACCGUCCUC   1
  ||*|||||*|||||*|||||||||
targets:334   GCUGAUACCAUAACCUGGCAGGAG   357

2.5 PREDICTED: Zea mays uncharacterized LOC109944283 (LOC109944283), mRNA NA coding protein psRNATarget