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BaseInfo

ncRNA ID	novel_zma_miR4120
Species	Zea mays
Class	miRNA
Genome position	Chr7:29125623-29125843 [+]
Reference genome	RefGen_v4
Source	SRR2287160;SRR2287161;SRR2287162;SRR2287163;SRR4237222
Length	21
Mature sequence(if miRNA)	201 - UACCCCUUUGAGCACCGGAUA - 221
Stem-loop(if miRNA)	--                     GU                  AAU UA  AC       C A                        -               C   UCCC   UCUGGUGCUUAAAGGGGUACG  GCUCAUGUGCACAUUUUA   U  GG  AUCCAUC C UAUCUAAUGGCAACAACCAAUUUU ACGAAGAACCCUUCC ACC    U   |||||||||||||||||||||  ||||||||||||||||||   |  ||  ||||||| | |||||||||||||||||||||||| ||||||||||||||| |||   AGGCCACGAGUUUCCCCAUGC  CGAGUGUAUGUGUAAAAU   G  CC  UGGGUAG G GUAGAUUACCGUUGUUGGUUAAAA UGCUUCUUGGGGAGG UGG    C AU                     UG                  CUU GC  CA       A C                        A               A   UUGU
Stem-loop sequence	UCUGGUGCUUAAAGGGGUACGGUGCUCAUGUGCACAUUUUAAAUUUAGGACAUCCAUCCCAUAUCUAAUGGCAACAACCAAUUUUACGAAGAACCCUUCCCACCUCCCUCUGUUGGUAGGAGGGGUUCUUCGUAAAAAUUGGUUGUUGCCAUUAGAUGCGAGAUGGGUACCCCGGUUCUAAAAUGUGUAUGUGAGCGUCGUACCCCUUUGAGCACCGGAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008661793.2	ncRNA:21   AUAGGCCACGAGUUUCCCCAU   1   ||||=|||||||||||||||| targets:878   UAUCUGGUGCUCAAAGGGGUA   898 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661794.2	ncRNA:21   AUAGGCCACGAGUUUCCCCAU   1   ||||=|||||||||||||||| targets:887   UAUCUGGUGCUCAAAGGGGUA   907 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT062061.1	ncRNA:21   AUAGGCCACGAGUUUCCCCAU   1   ||||=|||||||||||||||| targets:197   UAUCUGGUGCUCAAAGGGGUA   217 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0211A21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001350153.2	ncRNA:21   AUAGGCCACGAGUUUCCCCAU   1   ||||=|||||||||||||||| targets:197   UAUCUGGUGCUCAAAGGGGUA   217 Target Full Sequence	1.0	Zea mays uncharacterized LOC100275401 (LOC100275401), mRNA	NA	coding protein	psRNATarget
XM_008647790.2	ncRNA:21   AUAGGCCACGAGUUUCCCCAU   1   |*||||*|||||||||||||* targets:1183   UCUCCGUUGCUCAAAGGGGUU   1203 Target Full Sequence	2.0	PREDICTED: Zea mays ethylene-responsive transcription factor ERF039 (LOC103627503), mRNA	NA	coding protein	psRNATarget
NM_001175151.1	ncRNA:21   AUAGGCC-ACGAGUUUCCCCAU   1   *=||||*-|||||||||||||| targets:341   GGUCCGCAUGCUCAAAGGGGUA   362 Target Full Sequence	3.0	Zea mays uncharacterized LOC100382407 (LOC100382407), mRNA	NA	coding protein	psRNATarget
BT064191.1	ncRNA:21   AUAGGCC-ACGAGUUUCCCCAU   1   *=||||*-|||||||||||||| targets:341   GGUCCGCAUGCUCAAAGGGGUA   362 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0146O19 mRNA, complete cds	NA	coding protein	psRNATarget