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BaseInfo

ncRNA ID	novel_zma_miR4113
Species	Zea mays
Class	miRNA
Genome position	Chr7:113877187-113877282 [-]
Reference genome	RefGen_v4
Source	SRR2287160;SRR2287164
Length	22
Mature sequence(if miRNA)	75 - CCGGAGGAGAUUGGAGGGGCUA - 96
Stem-loop(if miRNA)	--     -  A                    C        CAA    AA   CCGGA GG GAUUGGAGGGGCUAGAAUCC UAUCUUAU   AUAA  C   ||||| || |||||||||||||||||||| ||||||||   ||||   GGCUU CC CUAAUCUCUCCGAUUUUAGG GUAGAAUA   UAUU  A UU     A  -                    A        AAC    CU
Stem-loop sequence	CCGGAGGAGAUUGGAGGGGCUAGAAUCCCUAUCUUAUCAAAUAAAACAUCUUAUCAAAUAAGAUGAGGAUUUUAGCCUCUCUAAUCCCAUUCGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539411.1	ncRNA:22   AUCGGGGAGGUUAGAGGAGGCC   1   ||||||||||||||*||||||| targets:3500   UAGCCCCUCCAAUCCCCUCCGG   3521 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:22   AUCGGGGAGGUUAGAGGAGGCC   1   ||||||||||||||*||||||| targets:3535   UAGCCCCUCCAAUCCCCUCCGG   3556 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:22   AUCGGGGAGGUUAGAGGAGGCC   1   ||||||||=|||||*||||||| targets:1113   UAGCCCCUUCAAUCCCCUCCGG   1134 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
BT065170.1	ncRNA:22   AUCGGGGAGGUUAGAGGAGGCC   1   ||*|||||||||||*||||||| targets:684   UAUCCCCUCCAAUCCCCUCCGG   705 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:22   AUCGGGGAGGUUAGAGGAGGCC   1   ||*|||||||||||*||||||| targets:1031   UAACCCCUCCAAUCCCCUCCGG   1052 Target Full Sequence	1.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:22   AUCGGGGAGGUUAGAGGAGGCC   1   ||*|||||||||||*||||||| targets:1564   UAUCCCCUCCAAUCCCCUCCGG   1585 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:22   AUCGGGGAGGUUAGAGGAGGCC   1   ||*|||||||||||*||||||| targets:1584   UAUCCCCUCCAAUCCCCUCCGG   1605 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:22   AUCGGGGAGGUUAGAGGAGGCC   1   ||*|||||||||||*||||||| targets:1608   UAUCCCCUCCAAUCCCCUCCGG   1629 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:22   AUCGGGGAGGUUAGAGGAGGCC   1   ||*|||||||||||*||||||| targets:1641   UAUCCCCUCCAAUCCCCUCCGG   1662 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget