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BaseInfo

ncRNA ID	novel_zma_miR4111
Species	Zea mays
Class	miRNA
Genome position	Chr10:16132684-16132802 [+]
Reference genome	RefGen_v4
Source	SRR2287160
Length	24
Mature sequence(if miRNA)	96 - AAUGGAAUAAAAUGUAGAGACUAA - 119
Stem-loop(if miRNA)	--    C  U                   AUAU     GU       A              AGUC CU UAUUUUAUUCCAUUUUAGU    AAAUU  CAAAUAU GAAAUUAAAAUA   |||| || |||||||||||||||||||    |||||  ||||||| |||||||||||G   UCAG GA GUAAAAUAAGGUAAAAUCA    UUUAA  GUUUAUA CUUUGAUUUUGA AA    A  U                   AGGU     AG       C
Stem-loop sequence	AGUCCCUUUAUUUUAUUCCAUUUUAGUAUAUAAAUUGUCAAAUAUAGAAAUUAAAAUAGAGUUUUAGUUUCCAUAUUUGGAAAUUUUGGAACUAAAAUGGAAUAAAAUGUAGAGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001139183.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   |||||||||||||||||||||||| targets:840   UUAGUCUCUACAUUUUAUUCCAUU   863 Target Full Sequence	0.0	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   |||||||||||||||||||||||| targets:840   UUAGUCUCUACAUUUUAUUCCAUU   863 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   |||||||||*|||||||||||||| targets:2149   UUAGUCUCUCCAUUUUAUUCCAUU   2172 Target Full Sequence	1.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*||||||||||||||||| targets:997   UUAGUCCCUACAUUUUAUUCCAUU   1020 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001112512.2	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*|||||||||||||=||| targets:1569   UUAGUCCCUACAUUUUAUUCUAUU   1592 Target Full Sequence	2.5	Zea mays Aldose reductase (pco147797a), mRNA	NA	coding protein	psRNATarget
XM_020553397.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   |||||=*||||||||||||||||| targets:577   UUAGUUCCUACAUUUUAUUCCAUU   600 Target Full Sequence	2.0	PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ060524.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*|||||||||||||=||| targets:69   UUAGUCCCUACAUUUUAUUCUAUU   92 Target Full Sequence	2.5	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget
JB163556.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*||||||||||||=|||| targets:29   UUAGUCCCUACAUUUUAUUUCAUU   52 Target Full Sequence	2.5	Sequence 1220 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235225.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*||||||||||||=|||| targets:29   UUAGUCCCUACAUUUUAUUUCAUU   52 Target Full Sequence	2.5	Sequence 1220 from Patent EP2985353	NA	coding protein	psRNATarget
HI403095.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*||||||||||||=|||| targets:29   UUAGUCCCUACAUUUUAUUUCAUU   52 Target Full Sequence	2.5	Sequence 1220 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020550478.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*||*|||||||||||||| targets:2648   UUAGUCCCUUCAUUUUAUUCCAUU   2671 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA	NA	coding protein	psRNATarget
BT063047.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*||*|||||||||||||| targets:2097   UUAGUCCCUUCAUUUUAUUCCAUU   2120 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174830.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*||*|||||||||||||| targets:2097   UUAGUCCCUUCAUUUUAUUCCAUU   2120 Target Full Sequence	2.0	Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*||*|||||||||||||| targets:292   UUAGUCCCUCCAUUUUAUUCCAUU   315 Target Full Sequence	2.0	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*|**|||||||||||||| targets:168   UUAGUCCCAUCAUUUUAUUCCAUU   191 Target Full Sequence	3.0	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
EU967664.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   |||||||||*||*||||||||||| targets:1124   UUAGUCUCUCCACUUUAUUCCAUU   1147 Target Full Sequence	2.5	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   |||||||||*||*||||||||||| targets:1124   UUAGUCUCUCCACUUUAUUCCAUU   1147 Target Full Sequence	2.5	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
EZ052166.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*|||*||||||||||||| targets:777   UUAGUCCCUAGAUUUUAUUCCAUU   800 Target Full Sequence	2.0	TSA: Zea mays contig53286, mRNA sequence	NA	coding protein	psRNATarget
EZ052038.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   |||||||*|*|||||||||||||| targets:199   UUAGUCUAUCCAUUUUAUUCCAUU   222 Target Full Sequence	2.0	TSA: Zea mays contig53158, mRNA sequence	NA	coding protein	psRNATarget
BT083561.2	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   |||||||*|*|||||||||||||| targets:202   UUAGUCUAUCCAUUUUAUUCCAUU   225 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0012F08 mRNA, complete cds	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*||*|||||||||||||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.0	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*|**|||||||||||||| targets:43   UUAGUCCCAUCAUUUUAUUCCAUU   66 Target Full Sequence	3.0	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*||*|||||||||||||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.0	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*|**|||||||||||||| targets:43   UUAGUCCCAUCAUUUUAUUCCAUU   66 Target Full Sequence	3.0	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*||*|||||||||||||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.0	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*|**|||||||||||||| targets:43   UUAGUCCCAUCAUUUUAUUCCAUU   66 Target Full Sequence	3.0	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
HI403052.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*||*|||||||||||||| targets:27   UUAGUCCCUUCAUUUUAUUCCAUU   50 Target Full Sequence	2.0	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget
JB163513.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*||*|||||||||||||| targets:27   UUAGUCCCUUCAUUUUAUUCCAUU   50 Target Full Sequence	2.0	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*||*|||||||||||||| targets:27   UUAGUCCCUUCAUUUUAUUCCAUU   50 Target Full Sequence	2.0	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
JB163455.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*|||||*||||||||||| targets:27   UUAGUCCCUACACUUUAUUCCAUU   50 Target Full Sequence	2.5	Sequence 1119 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235124.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*|||||*||||||||||| targets:27   UUAGUCCCUACACUUUAUUCCAUU   50 Target Full Sequence	2.5	Sequence 1119 from Patent EP2985353	NA	coding protein	psRNATarget
HI402994.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*|||||*||||||||||| targets:27   UUAGUCCCUACACUUUAUUCCAUU   50 Target Full Sequence	2.5	Sequence 1119 from Patent EP2074227	NA	coding protein	psRNATarget
HI406419.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*||*|||||||||||||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.0	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
JB166880.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*||*|||||||||||||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.0	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*||*|||||||||||||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.0	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001305845.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   |||*|||=|*|||||||||||||| targets:2082   UUAAUCUUUCCAUUUUAUUCCAUU   2105 Target Full Sequence	2.0	Zea mays uncharacterized LOC542022 (LOC542022), mRNA	NA	coding protein	psRNATarget
XM_008654984.2	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   ||||||*|**|||||||||||||| targets:2931   UUAGUCCCAUCAUUUUAUUCCAUU   2954 Target Full Sequence	3.0	PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA	NA	coding protein	psRNATarget
XM_020548522.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   *||*|=*|||=||||||||||||| targets:1241   CUAAUUACUAUAUUUUAUUCCAUU   1264 Target Full Sequence	3.0	PREDICTED: Zea mays UDP-glycosyltransferase 85A5-like (LOC109944057), mRNA	NA	coding protein	psRNATarget
BT054105.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   *||*|=*|||=||||||||||||| targets:1084   CUAAUUACUAUAUUUUAUUCCAUU   1107 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0104G11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546986.1	ncRNA:24   AAUCAGAGAUGUAAAAUAAGGUAA   1   *||*|=*|||=||||||||||||| targets:1079   CUAAUUACUAUAUUUUAUUCCAUU   1102 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100279354 (LOC100279354), mRNA	NA	coding protein	psRNATarget