Search result

BaseInfo

ncRNA ID novel_zma_miR4110
Species Zea mays
Class miRNA
Genome position Chr7:20303128-20303260 [+]
Reference genome RefGen_v4
Source SRR2287160
Length 24
Mature sequence(if miRNA) 1 - GAUAAGGACUAAACGGUAAGACGA - 24
Stem-loop(if miRNA) --   A  GA       GU    C    ----CU  C             A   U  C  A  GA   U
  GAU AG  CUAAACG  AAGA GAAU      GG CUAAUUAGUUCAU AUU GC GA GU  UGC A
  ||| ||  |||||||  |||| ||||      || ||||||||||||| ||| || || ||  |||
  CUA UU  GAUUUGC  UUCU CUUA      UC GAUUAGUUAGGUA UAA CG CU UA  AUG U
AU   C  AC       UG    A    AAUAAU  A             G   U  U  A  -A   A
Stem-loop sequence GAUAAGGACUAAACGGUAAGACGAAUCUGGCCUAAUUAGUUCAUAAUUUGCCGAAGUGAUGCUAUAGUAAAUAUCUGCUAAUGAUGGAUUGAUUAGACUUAAUAAAUUCAUCUUGUCGUUUAGCAUUCAUCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001157431.2
ncRNA:24   AGCAGAAUGGCAAAUCAGGAAUAG   1
  ||||||||==||||||||||||||
targets:648   UCGUCUUAUUGUUUAGUCCUUAUC   671

2.0 Zea mays surfeit locus protein 5 (LOC100284536), mRNA NA coding protein psRNATarget
EU967384.1
ncRNA:24   AGCAGAAUGGCAAAUCAGGAAUAG   1
  ||||||||==||||||||||||||
targets:636   UCGUCUUAUUGUUUAGUCCUUAUC   659

2.0 Zea mays clone 302214 mRNA sequence NA coding protein psRNATarget