ncRNA ID | novel_zma_miR4110 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr7:20303128-20303260 [+] |
Reference genome | RefGen_v4 |
Source | SRR2287160 |
Length | 24 |
Mature sequence(if miRNA) | 1 - GAUAAGGACUAAACGGUAAGACGA - 24 |
Stem-loop(if miRNA) |
--   A  GA       GU    C    ----CU  C             A   U  C  A  GA   U   GAU AG  CUAAACG  AAGA GAAU      GG CUAAUUAGUUCAU AUU GC GA GU  UGC A   ||| ||  |||||||  |||| ||||      || ||||||||||||| ||| || || ||  |||   CUA UU  GAUUUGC  UUCU CUUA      UC GAUUAGUUAGGUA UAA CG CU UA  AUG U AU   C  AC       UG    A    AAUAAU  A             G   U  U  A  -A   A |
Stem-loop sequence | GAUAAGGACUAAACGGUAAGACGAAUCUGGCCUAAUUAGUUCAUAAUUUGCCGAAGUGAUGCUAUAGUAAAUAUCUGCUAAUGAUGGAUUGAUUAGACUUAAUAAAUUCAUCUUGUCGUUUAGCAUUCAUCUA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_001157431.2 |
|
2.0 | Zea mays surfeit locus protein 5 (LOC100284536), mRNA | NA | coding protein | psRNATarget | |||||||||
EU967384.1 |
|
2.0 | Zea mays clone 302214 mRNA sequence | NA | coding protein | psRNATarget |