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BaseInfo

ncRNA ID	novel_zma_miR4109
Species	Zea mays
Class	miRNA
Genome position	Chr1:47395591-47395656 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647386
Length	24
Mature sequence(if miRNA)	43 - AGAUCUACGGCGCCGAGGUACGUG - 66
Stem-loop(if miRNA)	--        A        A           GA   CGUACCUC GCGCCGUA AUCUUGGCGCU  G   |||||||| |||||||| |||||||||||   GCAUGGAG CGCGGCAU UAGAGCCGCGG  G GU        C        C           AU
Stem-loop sequence	CGUACCUCAGCGCCGUAAAUCUUGGCGCUGAGGUAGGCGCCGAGAUCUACGGCGCCGAGGUACGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544295.1	ncRNA:24   GUGCAUGGAGCCGCGGCAUCUAGA   1   ||||||||||||||||*||||||| targets:1   CACGUACCUCGGCGCCAUAGAUCU   24 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA	NA	coding protein	psRNATarget
XM_020545942.1	ncRNA:24   GUGCAUGGAGCCGCGGCAUCUAGA   1   ||||||||||||||||*||||||| targets:158   CACGUACCUCGGCGCCAUAGAUCU   181 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA	NA	coding protein	psRNATarget
XM_008666282.2	ncRNA:24   GUGCAUGGAGCCGCGGCAUCUAGA   1   ||||||||||||||||*||||||| targets:158   CACGUACCUCGGCGCCAUAGAUCU   181 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA	NA	coding protein	psRNATarget
XM_020545943.1	ncRNA:24   GUGCAUGGAGCCGCGGCAUCUAGA   1   ||||||||||||||||*||||||| targets:158   CACGUACCUCGGCGCCAUAGAUCU   181 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA	NA	coding protein	psRNATarget
XM_008652363.2	ncRNA:24   GUGCAUGGAGCCGCGGCAUCUAGA   1   ||||||||||||||||*||||||| targets:162   CACGUACCUCGGCGCCAUAGAUCU   185 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA	NA	coding protein	psRNATarget
XM_020541347.1	ncRNA:24   GUGCAUGGAGCCGCGGCAUCUAGA   1   ||||||||||||||||*||||||| targets:162   CACGUACCUCGGCGCCAUAGAUCU   185 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA	NA	coding protein	psRNATarget
XM_020537732.1	ncRNA:24   GUGCAUGGAGCCGCGGCAUCUAGA   1   ||||||||||||||||*||||||| targets:227   CACGUACCUCGGCGCCAUAGAUCU   250 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA	NA	coding protein	psRNATarget
XM_008654703.2	ncRNA:24   GUGCAUGGAGCCGCGGCAUCUAGA   1   ||||||||||||||||*||||||| targets:934   CACGUACCUCGGCGCCAUAGAUCU   957 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA	NA	coding protein	psRNATarget
XM_008678030.1	ncRNA:23   UGCAUGGAGCCGCGGCAUCUAGA   1   |=|||||||||||||*||||||| targets:1   AUGUACCUCGGCGCCAUAGAUCU   23 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA	NA	coding protein	psRNATarget
XM_020543535.1	ncRNA:24   GUGCAUGGAGCCGCGGCAUCUAGA   1   |||--|=|||||||||*||||||| targets:281   CAC--AUCUCGGCGCCAUAGAUCU   302 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109942121), mRNA	NA	coding protein	psRNATarget
NM_001146799.1	ncRNA:24   GUGCAUGGAGCCGCGGCAUCUAGA   1   |||--|=|||||||||*||||||| targets:1673   CAC--AUCUCGGCGCCAUAGAUCU   1694 Target Full Sequence	2.5	Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), mRNA	NA	coding protein	psRNATarget
BT038470.1	ncRNA:24   GUGCAUGGAGCCGCGGCAUCUAGA   1   |||--|=|||||||||*||||||| targets:1673   CAC--AUCUCGGCGCCAUAGAUCU   1694 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0274N23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547329.1	ncRNA:24   GUGCAUGGAGCCGCGGCAUCUAGA   1   |||--|=|||||||||*||||||| targets:1755   CAC--AUCUCGGCGCCAUAGAUCU   1776 Target Full Sequence	2.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547327.1	ncRNA:24   GUGCAUGGAGCCGCGGCAUCUAGA   1   |||--|=|||||||||*||||||| targets:1780   CAC--AUCUCGGCGCCAUAGAUCU   1801 Target Full Sequence	2.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008668082.2	ncRNA:24   GUGCAUGGAGCCGCGGCAUCUAGA   1   |||--|=|||||||||*||||||| targets:1787   CAC--AUCUCGGCGCCAUAGAUCU   1808 Target Full Sequence	2.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA	NA	coding protein	psRNATarget