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BaseInfo

ncRNA ID	novel_zma_miR4108
Species	Zea mays
Class	miRNA
Genome position	Chr7:159191680-159191904 [-]
Reference genome	RefGen_v4
Source	SRR2287160;SRR2287162;SRR1997866
Length	24
Mature sequence(if miRNA)	202 - ACAUGAAAGAUUGGUGCACAUGGU - 225
Stem-loop(if miRNA)	--     A                                                                  AUUUGGUAUA   UG   AGA  ACCUCCAAUGUGGUGGUGUGUA   ACAUG AAGAUUGGUGCACAUGGUGCACAUAUUAAAUCAUCACCACUCAUUUUAGAUCUAACGUCUCUAGUU          UUU  CUG   AC                      G   ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||  |||   ||                      U   UGUAC UUCUAACUACGUGUACCACGUGUAUAAUUUAGUAGUGGUGAGUAAAAUCUAGAUUGCAGAGAUCAA          UAG  UAA   GU                      G CG     C                                                                  ---------C   --   ---  UAAAUGUUUAUUGUGGAAGGUG
Stem-loop sequence	ACAUGAAAGAUUGGUGCACAUGGUGCACAUAUUAAAUCAUCACCACUCAUUUUAGAUCUAACGUCUCUAGUUAUUUGGUAUAUUUUGCUGAGAACACCUCCAAUGUGGUGGUGUGUAGUGGUGGAAGGUGUUAUUUGUAAAUUGAAUGAUCAACUAGAGACGUUAGAUCUAAAAUGAGUGGUGAUGAUUUAAUAUGUGCACCAUGUGCAUCAAUCUUCCAUGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY109321.1	ncRNA:24   UGGUACACGUGGUUAGAAAGUACA   1   |=||||||||=||||||||||||| targets:1001   AUCAUGUGCAUCAAUCUUUCAUGU   1024 Target Full Sequence	1.0	Zea mays PCO070230 mRNA sequence	NA	coding protein	psRNATarget
XM_008646350.2	ncRNA:24   UGGUACACGUGGUUAGAAAGUACA   1   ||||||||||||||||||*||||| targets:1767   ACCAUGUGCACCAAUCUUCCAUGU   1790 Target Full Sequence	1.5	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC103625944), mRNA	NA	coding protein	psRNATarget
JB166690.1	ncRNA:24   UGGUACACGUGGUUAGAAAGUACA   1   |*||||||||||||||||*||||| targets:50   AGCAUGUGCACCAAUCUUCCAUGU   73 Target Full Sequence	1.5	Sequence 4354 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238359.1	ncRNA:24   UGGUACACGUGGUUAGAAAGUACA   1   |*||||||||||||||||*||||| targets:50   AGCAUGUGCACCAAUCUUCCAUGU   73 Target Full Sequence	1.5	Sequence 4354 from Patent EP2985353	NA	coding protein	psRNATarget
HI406229.1	ncRNA:24   UGGUACACGUGGUUAGAAAGUACA   1   |*||||||||||||||||*||||| targets:50   AGCAUGUGCACCAAUCUUCCAUGU   73 Target Full Sequence	1.5	Sequence 4354 from Patent EP2074227	NA	coding protein	psRNATarget
BT037068.1	ncRNA:24   UGGUACACGUGGUUAGAAAGUACA   1   |*||||||||||||||||*||||| targets:1069   AGCAUGUGCACCAAUCUUCCAUGU   1092 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0153K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT087938.1	ncRNA:24   UGGUACACGUGGUUAGAAAGUACA   1   |*||||||||||||||||*||||| targets:1034   AGCAUGUGCACCAAUCUUCCAUGU   1057 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0319L01 mRNA, complete cds	NA	coding protein	psRNATarget
BT018927.1	ncRNA:24   UGGUACACGUGGUUAGAAAGUACA   1   |*||||||||||||||||*||||| targets:1214   AGCAUGUGCACCAAUCUUCCAUGU   1237 Target Full Sequence	1.5	Zea mays clone Contig55.F mRNA sequence	NA	coding protein	psRNATarget
XM_008679083.2	ncRNA:24   UGGUACACGUGGUUAGAAAGUACA   1   |*||||||||||||||||*||||| targets:2182   AGCAUGUGCACCAAUCUUCCAUGU   2205 Target Full Sequence	1.5	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679080.2	ncRNA:24   UGGUACACGUGGUUAGAAAGUACA   1   |*||||||||||||||||*||||| targets:2191   AGCAUGUGCACCAAUCUUCCAUGU   2214 Target Full Sequence	1.5	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ070596.1	ncRNA:24   UGGUACACGUGGUUAGAAAGUACA   1   **==||||||=|||||||*||||| targets:11   UGUGUGUGCAUCAAUCUUCCAUGU   34 Target Full Sequence	2.5	TSA: Zea mays contig06233, mRNA sequence	NA	coding protein	psRNATarget