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BaseInfo

ncRNA ID	novel_zma_miR4106
Species	Zea mays
Class	miRNA
Genome position	Chr10:105693055-105693128 [-]
Reference genome	RefGen_v4
Source	SRR2287160;SRR2287162
Length	24
Mature sequence(if miRNA)	51 - AUGGAUUGAAGGGAAUUGAUACGG - 74
Stem-loop(if miRNA)	--         -A   AA UG  ACGGAUU     AGA   AUGGAUUGA  GGG  U  AU       GUGAG   U   |||||||||  |||  |  ||       |||||   U   UACCUAACU  CCC  A  UA       CAUUC   U UA         CA   AA GU  --GGGAU     AAU
Stem-loop sequence	AUGGAUUGAAGGGAAUUGAUACGGAUUGUGAGAGAUUUUAACUUACUAGGGAUUGAAACCCACUCAAUCCAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT055069.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||||||||||*||||||||||||| targets:971   CCGUAUCAAUCCCCUUCAAUCCAU   994 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||||||||||*||||||||||||| targets:1492   CCGUAUCAAUCCCCUUCAAUCCAU   1515 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||||||||||*||||||||||||| targets:1492   CCGUAUCAAUCCCCUUCAAUCCAU   1515 Target Full Sequence	1.0	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||||||||||*||||||||||||| targets:1478   CCGUAUCAAUCCCCUUCAAUCCAU   1501 Target Full Sequence	1.0	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||||||||||*||||||||||||| targets:1460   CCGUAUCAAUCCCCUUCAAUCCAU   1483 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||||||||||*||||||||||||| targets:1416   CCGUAUCAAUCCCCUUCAAUCCAU   1439 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||||||||||*=|||||||||||| targets:3115   CCGUAUCAAUCUCCUUCAAUCCAU   3138 Target Full Sequence	2.5	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   |||||||=||*||||||||||||| targets:1693   CCGUAUCGAUCCCCUUCAAUCCAU   1716 Target Full Sequence	2.0	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
XM_008658561.2	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||||||||||*||||*|||||||| targets:296   CCGUAUCAAUCCCCUCCAAUCCAU   319 Target Full Sequence	2.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||||||||||*||||*|||||||| targets:1625   CCGUAUCAAUCCCCUCCAAUCCAU   1648 Target Full Sequence	2.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||||||||||*||||*|||||||| targets:1975   CCGUAUCAAUCCCCUCCAAUCCAU   1998 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||||||||||*||||*|||||||| targets:1975   CCGUAUCAAUCCCCUCCAAUCCAU   1998 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_020545207.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||||||||||*||||*|||||||| targets:17   CCGUAUCAAUCCCCUCCAAUCCAU   40 Target Full Sequence	2.5	PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||||||||||*||||*|||||||| targets:694   CCGUAUCAAUCCCCUCCAAUCCAU   717 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||*|||||||*||||*|||||||| targets:912   CCAUAUCAAUCCCCUCCAAUCCAU   935 Target Full Sequence	2.5	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||*|||||||*||||*|||||||| targets:840   CCAUAUCAAUCCCCUCCAAUCCAU   863 Target Full Sequence	2.5	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||*|||||||*||||*|||||||| targets:839   CCAUAUCAAUCCCCUCCAAUCCAU   862 Target Full Sequence	2.5	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||*|||||||*||||*|||||||| targets:839   CCAUAUCAAUCCCCUCCAAUCCAU   862 Target Full Sequence	2.5	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||*|||||||*||||*|||||||| targets:841   CCAUAUCAAUCCCCUCCAAUCCAU   864 Target Full Sequence	2.5	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||*|||||||*||||*|||||||| targets:893   CCAUAUCAAUCCCCUCCAAUCCAU   916 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||*|||||||*||||*|||||||| targets:440   CCAUAUCAAUCCCCUCCAAUCCAU   463 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
BT036972.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   |***||||=|||||||||||||*| targets:1294   CGCAAUCAGUUCCCUUCAAUCCUU   1317 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0149L07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001142987.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   |***||||=|||||||||||||*| targets:1294   CGCAAUCAGUUCCCUUCAAUCCUU   1317 Target Full Sequence	2.5	Zea mays uncharacterized LOC100216569 (LOC100216569), mRNA	NA	coding protein	psRNATarget
BT038739.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   |***||||=|||||||||||||*| targets:965   CGCAAUCAGUUCCCUUCAAUCCUU   988 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0316N05 mRNA, complete cds	NA	coding protein	psRNATarget
EZ052660.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   |***||||=|||||||||||||*| targets:129   CGCAAUCAGUUCCCUUCAAUCCUU   152 Target Full Sequence	2.5	TSA: Zea mays contig53781, mRNA sequence	NA	coding protein	psRNATarget
XM_008651631.2	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||---|||||*|=||||||||||| targets:3484   CC---UCAAUCCUCUUCAAUCCAU   3504 Target Full Sequence	2.5	PREDICTED: Zea mays Topoisomerase II-associated protein PAT1 (LOC103630586), mRNA	NA	coding protein	psRNATarget
BT017823.1	ncRNA:24   GGCAUAGUUAAGGGAAGUUAGGUA   1   ||---|||||*|=||||||||||| targets:856   CC---UCAAUCCUCUUCAAUCCAU   876 Target Full Sequence	2.5	Zea mays clone EL01N0508B10.c mRNA sequence	NA	coding protein	psRNATarget