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BaseInfo

ncRNA ID	novel_zma_miR4104
Species	Zea mays
Class	miRNA
Genome position	Chr10:149277489-149277635 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647386;SRR2647391;SRR2939884
Length	21
Mature sequence(if miRNA)	1 - AGGACUGGAUCGCCGGAGGGU - 21
Stem-loop(if miRNA)	--                            A GGAGCACAGGAUCGAAGCAAUCCCAGAGGGCGGCGGCGGGA   AGGACUGGAUCGCCGGAGGGUAGGCAAG G                                         A   |||||||||||||||||||||||||||| |                                         G   UCCUGACCUAGCGGCCUCCCAUUCGUUC G                                         A GC                            G CUGGGGAGGGAGAGAGAGAGACAAAGAGAGCGGCGAAGGGA
Stem-loop sequence	AGGACUGGAUCGCCGGAGGGUAGGCAAGAGGGAGCACAGGAUCGAAGCAAUCCCAGAGGGCGGCGGCGGGAAGAAGGGAAGCGGCGAGAGAAACAGAGAGAGAGAGGGAGGGGUCGGCUUGCUUACCCUCCGGCGAUCCAGUCCUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008663294.2	ncRNA:21   UGGGAGGCCGCUAGGUCAGGA   1   ||||||||||||||||||||| targets:82   ACCCUCCGGCGAUCCAGUCCU   102 Target Full Sequence	0.0	PREDICTED: Zea mays autophagy-related 4b (Atg4b), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU972733.1	ncRNA:21   UGGGAGGCCGCUAGGUCAGGA   1   *||||||*||||||||*|||| targets:17   UCCCUCCCGCGAUCCACUCCU   37 Target Full Sequence	2.5	Zea mays clone 386906 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT034455.1	ncRNA:21   UGGGAGGCCGCUAGGUCAGGA   1   *||||||*||||||||*|||| targets:29   UCCCUCCCGCGAUCCACUCCU   49 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0170P14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137692.1	ncRNA:21   UGGGAGGCCGCUAGGUCAGGA   1   *||||||*||||||||*|||| targets:29   UCCCUCCCGCGAUCCACUCCU   49 Target Full Sequence	2.5	Zea mays ADP-ribosylation factor B1B (LOC100192472), mRNA	NA	coding protein	psRNATarget
EU966561.1	ncRNA:21   UGGGAGGCCGCUAGGUCAGGA   1   *||||||*||||||||*|||| targets:81   UCCCUCCCGCGAUCCACUCCU   101 Target Full Sequence	2.5	Zea mays clone 295292 mRNA sequence	NA	coding protein	psRNATarget
BT054205.1	ncRNA:21   UGGGAGGCCGCUAGGUCAGGA   1   *||||||*||||||||*|||| targets:111   UCCCUCCCGCGAUCCACUCCU   131 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0168A06 mRNA, complete cds	NA	coding protein	psRNATarget
DQ245845.1	ncRNA:21   UGGGAGGCCGCUAGGUCAGGA   1   *||||||*||||||||*|||| targets:144   UCCCUCCCGCGAUCCACUCCU   164 Target Full Sequence	2.5	Zea mays clone 20820 mRNA sequence	NA	coding protein	psRNATarget