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BaseInfo

ncRNA ID	novel_zma_miR4103
Species	Zea mays
Class	miRNA
Genome position	Chr6:135565341-135565454 [+]
Reference genome	RefGen_v4
Source	SRR2287160
Length	21
Mature sequence(if miRNA)	94 - AUGGAAUAAAAUGGAUGGACU - 114
Stem-loop(if miRNA)	--   C                G     A      CA                   C   UCC UCCAUUUUAUUUCAUU UAGUC CUAAAU  UUAAAUACGGAAACUAAAA U   ||| |||||||||||||||| ||||| ||||||  ||||||||||||||||||| C   AGG AGGUAAAAUAAGGUAA AUCAG GAUUUA  GAUUUAUGUCUUUGAUUUU U UC   U                A     -      AC                   A
Stem-loop sequence	UCCCUCCAUUUUAUUUCAUUGUAGUCACUAAAUCAUUAAAUACGGAAACUAAAACUCUAUUUUAGUUUCUGUAUUUAGCAAUUUAGGACUAAAAUGGAAUAAAAUGGAUGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ052038.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   ||||=|||||||||||||||| targets:201   AGUCUAUCCAUUUUAUUCCAU   221 Target Full Sequence	1.0	TSA: Zea mays contig53158, mRNA sequence	NA	coding protein	psRNATarget
BT083561.2	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   ||||=|||||||||||||||| targets:204   AGUCUAUCCAUUUUAUUCCAU   224 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0012F08 mRNA, complete cds	NA	coding protein	psRNATarget
BT019141.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*||||||||||||||| targets:294   AGUCCCUCCAUUUUAUUCCAU   314 Target Full Sequence	1.0	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*||||||||||||||| targets:169   AGUCCCUCCAUUUUAUUCCAU   189 Target Full Sequence	1.0	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
HI406713.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*||||||||||||||| targets:169   AGUCCCUCCAUUUUAUUCCAU   189 Target Full Sequence	1.0	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
JB167174.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*||||||||||||||| targets:169   AGUCCCUCCAUUUUAUUCCAU   189 Target Full Sequence	1.0	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
HI406419.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*||||||||||||||| targets:78   AGUCCCUCCAUUUUAUUCCAU   98 Target Full Sequence	1.0	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*||||||||||||||| targets:78   AGUCCCUCCAUUUUAUUCCAU   98 Target Full Sequence	1.0	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
JB166880.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*||||||||||||||| targets:78   AGUCCCUCCAUUUUAUUCCAU   98 Target Full Sequence	1.0	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   ||||=*||||||||||||||| targets:2151   AGUCUCUCCAUUUUAUUCCAU   2171 Target Full Sequence	2.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550478.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*|=||||||||||||| targets:2650   AGUCCCUUCAUUUUAUUCCAU   2670 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA	NA	coding protein	psRNATarget
NM_001174830.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*|=||||||||||||| targets:2099   AGUCCCUUCAUUUUAUUCCAU   2119 Target Full Sequence	2.0	Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA	NA	coding protein	psRNATarget
BT063047.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*|=||||||||||||| targets:2099   AGUCCCUUCAUUUUAUUCCAU   2119 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds	NA	coding protein	psRNATarget
HI403052.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*|=||||||||||||| targets:29   AGUCCCUUCAUUUUAUUCCAU   49 Target Full Sequence	2.0	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*|=||||||||||||| targets:29   AGUCCCUUCAUUUUAUUCCAU   49 Target Full Sequence	2.0	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
JB163513.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*|=||||||||||||| targets:29   AGUCCCUUCAUUUUAUUCCAU   49 Target Full Sequence	2.0	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*||||||||||||||* targets:2989   AGUCCCUCCAUUUUAUUCCAC   3009 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*||||||||||||||* targets:2600   AGUCCCUCCAUUUUAUUCCAC   2620 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*||||||||||||||* targets:482   AGUCCCUCCAUUUUAUUCCAC   502 Target Full Sequence	2.0	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020543560.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   **||||||||||||||||=|* targets:478   CAUCCAUCCAUUUUAUUCUAA   498 Target Full Sequence	2.5	PREDICTED: Zea mays putative POX domain/homeobox DNA-binding domain family protein (HB21), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT042226.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   **||||||||||||||||=|* targets:403   CAUCCAUCCAUUUUAUUCUAA   423 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0169E10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*|*||||||||||||| targets:999   AGUCCCUACAUUUUAUUCCAU   1019 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945607.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*||||*|||||||||| targets:143   AGUCCCUCCAAUUUAUUCCAU   163 Target Full Sequence	2.5	Zea mays clone 279279 mRNA sequence	NA	coding protein	psRNATarget
NM_001305845.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |*||=*||||||||||||||| targets:2084   AAUCUUUCCAUUUUAUUCCAU   2104 Target Full Sequence	2.0	Zea mays uncharacterized LOC542022 (LOC542022), mRNA	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   ||||=*|*||||||||||||| targets:842   AGUCUCUACAUUUUAUUCCAU   862 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   ||||=*|*||||||||||||| targets:842   AGUCUCUACAUUUUAUUCCAU   862 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553397.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||=|*|*||||||||||||| targets:579   AGUUCCUACAUUUUAUUCCAU   599 Target Full Sequence	3.0	PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543931.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   =*|||=||||||*|||||||| targets:10771   GAUCCGUCCAUUCUAUUCCAU   10791 Target Full Sequence	2.5	PREDICTED: Zea mays NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (LOC109942203), mRNA	NA	coding protein	psRNATarget
XM_008683103.2	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   **|||*|||||||||||=||| targets:2886   UAUCCCUCCAUUUUAUUUCAU   2906 Target Full Sequence	2.5	PREDICTED: Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001143572.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   **|||*|||||||||||=||| targets:887   UAUCCCUCCAUUUUAUUUCAU   907 Target Full Sequence	2.5	Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), mRNA	NA	coding protein	psRNATarget
BT038140.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   **|||*|||||||||||=||| targets:887   UAUCCCUCCAUUUUAUUUCAU   907 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0213P07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660555.2	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*|*||||||||||||* targets:1917   AGUCCCUACAUUUUAUUCCAC   1937 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957896.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |||||*|*||||||||||||* targets:1270   AGUCCUUACAUUUUAUUCCAC   1290 Target Full Sequence	3.0	Zea mays clone 1630391 mRNA sequence	NA	coding protein	psRNATarget
EZ113222.1	ncRNA:21   UCAGGUAGGUAAAAUAAGGUA   1   |**=||||||||||||||||* targets:96   AAAUCAUCCAUUUUAUUCCAC   116 Target Full Sequence	3.0	TSA: Zea mays contig48883, mRNA sequence	NA	coding protein	psRNATarget