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BaseInfo

ncRNA ID	novel_zma_miR4102
Species	Zea mays
Class	miRNA
Genome position	Chr6:119322143-119322251 [+]
Reference genome	RefGen_v4
Source	SRR2287160;SRR2287165
Length	24
Mature sequence(if miRNA)	86 - GAUGAAUUAUAGUGGAGCGCGGCC - 109
Stem-loop(if miRNA)	--      ---      GC     -    -      U    G    C  UU   C  G   CUGCGC   ACUGUA  GUUUG CAGG UGUCCG UGCA UCGA CG  GCG UG U   ||||||   ||||||  ||||| |||| |||||| |||| |||| ||  ||| || A   GGCGCG   UGAUAU  UAAGU GUCU ACAGGC ACGU GGUU GC  CGU GC G CC      AGG      --     A    G      C    -    U  CU   U  U
Stem-loop sequence	CUGCGCACUGUAGCGUUUGCAGGUGUCCGUUGCAGUCGACCGUUGCGCUGGUAGUCGUUGCUCCGUUUGGUGCACCGGACAGUCUGAUGAAUUAUAGUGGAGCGCGGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT088050.1	ncRNA:24   CCGGCGCGAGGUGAUAUUAAGUAG   1   ***||||||||=|||||||||||| targets:1060   CAGCGCGCUCCGCUAUAAUUCAUC   1083 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0379I10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196891.1	ncRNA:24   CCGGCGCGAGGUGAUAUUAAGUAG   1   ***||||||||=|||||||||||| targets:1060   CAGCGCGCUCCGCUAUAAUUCAUC   1083 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502413 (LOC100502413), mRNA	NA	coding protein	psRNATarget
BT060603.1	ncRNA:24   CC--GGCGCGAGGUGAUAUUAAGUAG   1   ||--=|-||||||=|||||||||||| targets:1266   GGAAUC-CGCUCCGCUAUAAUUCAUC   1290 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0021N16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542612.1	ncRNA:24   CCGGCGCGAGGUGAUAUUAAGUAG   1   ||*|*|*||||=|||||||||||| targets:1225   GGGCACCCUCCGCUAUAAUUCAUC   1248 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103635109 (LOC103635109), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657658.2	ncRNA:24   CCGGCGCGAGGUGAUAUUAAGUAG   1   ||*|*|*||||=|||||||||||| targets:1309   GGGCACCCUCCGCUAUAAUUCAUC   1332 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103635109 (LOC103635109), transcript variant X1, mRNA	NA	coding protein	psRNATarget